Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq14443 107 2e-18 >seq14443 Length=4965 Score = 107 bits (118), Expect = 2e-18 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 || || || | |||||| || || ||||| || || | ||| ||||| ||||| ||||| Sbjct 1771 AAAGGAGTCAAATGTTTAGCAACTCCAATGGGTCCCATGCCTGGACCACCACCGCCATGA 1712 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 |||||||| ||||| || ||||| || | ||| || ||||| || ||| |||| || Sbjct 1711 GGAATACAAAATGTTTTGTGTAAGTTCAAATGGCAAACATCAGCTCCAATGTCAGCAGGA 1652 Query 138282 TTTGCTAGA-CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 || | | ||||| || || | | ||| ||||| || | ||||| || ||||||| Sbjct 1651 GA-GCAATAGCCTACTTGGGCTTGCAAATTGGCACCGTCCATGTATACTTGTCCACCATG 1593 Query 138341 GTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 | ||||| || ||||| | | | || | ||| | ||||||||||| || || Sbjct 1592 AGCGTGAACAATATTACACAATTCACGAATTCCTTCTTCGTACACACCATGAGTTGAAGG 1533 Query 138401 ATATGTAATCATAATACA 138418 ||| || | ||| | ||| Sbjct 1532 ATAAGTTACCATTACACA 1515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578630670878680