Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1807 149 7e-31 seq7650 141 1e-28 seq146 105 8e-18 >seq1807 Length=15346 Score = 149 bits (164), Expect = 7e-31 Identities = 231/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Plus Query 75950 AAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTA 76009 || || || ||| |||||||||||||||| || |||||| | ||||| |||||| | Sbjct 8268 AAAAGCAATCAACAGAATTTGGGAACAATTAAATCTTCAAATTTATGCACAGAAATTGTG 8327 Query 76010 GAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG 76069 ||||||||| | ||||| | ||||| || |||||||| || ||| | | || || Sbjct 8328 GAGTACACATCTCCAGATGAAATTGCTGTATGTAATTTGGCCTCTATCTCGTTGCCCAAA 8387 Query 76070 TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATT 76129 | |||||||| | ||| || || ||||||| ||||||| | ||| | || || || Sbjct 8388 TTTGTCAATGTTGCGACACGAACATTTGATT-TGAAAAATTAGTAGAAGTTACGAAAATA 8446 Query 76130 GTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA 76189 || ||| |||| | ||| | | ||||||| |||| |||| || ||| | | || | Sbjct 8447 GTAACCCGAAATTTGAACAAAATTATTGACATTAATTATTAT-CCAATGAAAGAG-GCAA 8504 Query 76190 AA--GTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTAT 76247 || || ||| || || | |||||||| | |||||||||||||| || ||||||| Sbjct 8505 AAACTTCGAATTTGAAGCATCGCCCTATTGGCATTGGTGTTCAAGGTCTGGCAGATGTAT 8564 Query 76248 TTATTTTGTGCCGCTACGCATTTGA 76272 | || ||| |||| ||||||| Sbjct 8565 TCATATTGCTGCGCTTTCCATTTGA 8589 >seq7650 Length=7814 Score = 141 bits (156), Expect = 1e-28 Identities = 327/487 (67%), Gaps = 12/487 (2%) Strand=Plus/Minus Query 75950 AAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTA 76009 ||||| ||||||||||||||||| ||||| ||| || ||| | |||||||||||| | Sbjct 3011 AAGAGCAACCAAAAGAATTTGGGCACAATAAAGTCATCGAATTTGTGCACGGAAATTGTG 2952 Query 76010 GAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG 76069 ||||||||| | ||| || ||| || ||||||||||| || || || | || ||| Sbjct 2951 GAGTACACATCTCCGGACGAAGTGGCAGTGTGCAATTTGGCGTCGATTGCATTGCCCAAG 2892 Query 76070 TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATT 76129 | ||| || | |||| || ||||||| |||||||| |||||| | || || Sbjct 2891 TTTGTGGATCCAAAGACGCGAGACTTTGATTTGAAAAAACTTGTCGAAATCGCCAAAGTT 2832 Query 76130 GTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGA 76189 || || || || | ||| ||| |||||| |||| ||| || || | || ||| Sbjct 2831 GTGACAAAGAACTTGAACAAAGTGATTGACGTGAATTATTACCCTGTCAAAGAAGC-CGA 2773 Query 76190 AA-GTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 || || || || |||| | || ||||| | || || ||||| || |||||| || Sbjct 2772 AACATCGAACGTGAAACACCGTCCAATTGGCATTGGCGTGCAAGGACTGGCGGATACGTT 2713 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAG--ATGAAGCCAAGGAGATGAATGCTCGTATC 76306 |||| | ||||| ||||||| ||| | || || | ||||| ||| Sbjct 2712 TATTCTCATGCGCTATCCATTTGA--CAGCAAAGAGGCACTCCAACTGAATCGAGATATA 2655 Query 76307 TTTGAAACCATGTA---TCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA 76363 |||||| |||| || | |||| || ||| || |||||||||||| Sbjct 2654 TTTGAAGCCATTTACTTTGGCGCA---GTGTCGGCTTCGTGCGAATTGGCTGAAAAGTGT 2598 Query 76364 GGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATG 76423 || |||| | | |||| || ||||| || ||| |||||| || || ||||| ||| Sbjct 2597 GGGCCCTACAAATCCTTTGCTGGGTCTCCTGCCTCCAAAGGGGAACTCCAATTTGACATG 2538 Query 76424 TGGGAAG 76430 |||| || Sbjct 2537 TGGGGAG 2531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 || || || || ||| | || |||| |||||||||||||| || ||| ||||| ||| Sbjct 2393 GGACTACGAAATAGTTTATTAGTGGCGCCAATGCCAACAGCGTCGACCAGTCAAATATTG 2334 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCA 76606 || ||||| || ||||||||||||||||| | || | ||| || | | || | ||| Sbjct 2333 GGAAATAACGAGTGCTTTGAACCATACACGAGCAATGTATACGTGCGTCGCACTTTGGCA 2274 Query 76607 GGTGAGTTTGT 76617 || |||||||| Sbjct 2273 GGCGAGTTTGT 2263 >seq146 Length=10098 Score = 105 bits (116), Expect = 8e-18 Identities = 330/505 (65%), Gaps = 12/505 (2%) Strand=Plus/Minus Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 || ||| ||| || | ||||| |||||||| || ||||| || || ||| || || Sbjct 9313 AAAGATCATTGCAATAGAAAGAGCAACCAAAAAAACTTGGGTACGATAAAGTCATCGAAC 9254 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 | ||||| || || | ||||||||| | || || || || ||||| ||||| Sbjct 9253 TTGTGCACCGAGATAGTGGAGTACACATCTCCAGACGAAGTCGCGGTGTGCAACTTGGCG 9194 Query 76052 TCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT 76111 || || || || || || | ||| ||| | ||| ||||| || || | || ||||| Sbjct 9193 TCGATTGCTCTGCCTAAATTTGTGGATGCAAAGAGTCGCAAGTTCGACTTGGAGAAACTG 9134 Query 76112 CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTAT 76171 ||| | || || | || || || || | ||| ||| |||||| || |||||| Sbjct 9133 GTCGAAGTGACCAAAGTAGTGACAAAGAACTTGAACAAAGTGATTGACGTGAACTTTTAT 9074 Query 76172 CCCGTTGAGACTGCGCGA-AAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCA 76230 |||| ||| | | ||| ||| ||| || |||| |||| ||||| | ||||| || Sbjct 9073 CCCG-TGAAAGAGGCCGAGGTGTCCAATTTGAAACACCGACCAATTGGCATTGGTGTGCA 9015 Query 76231 AGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGATGAAGCCAAGG 76289 || | || ||||| || ||| || ||| | | | ||||| | || ||| Sbjct 9014 GGGCTTGGCCGATGTGTTCATTCTGATGCAATTGC-CCTTTGAAAGCAAAGATGCCCTTC 8956 Query 76290 AGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAAT 76349 | |||| | |||||||| |||| || | | | || ||| |||||||| Sbjct 8955 AATTGAACCGTGAAATCTTTGAGGCCATTTACTTTGGAGCAGTGTCGGCTTCTTGTGAAT 8896 Query 76350 TGGCTGAAGCCCAAGGTT----CCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGG 76405 |||| ||| ||| || |||||||| | | |||| || || || ||| |||| Sbjct 8895 TGGCGGAA----AAGTTTGGGCCCTATGAGTCGTACAAGGGATCACCAGCTTCCAAAGGA 8840 Query 76406 GTGCTTCAGTTTGATATGTGGGAAG 76430 | ||| || ||||||||||||| || Sbjct 8839 GAGCTGCAATTTGATATGTGGGGAG 8815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596190711189920