Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq35091 98.7 1e-15 seq48206 96.9 5e-15 seq36324 96.9 5e-15 seq48569 95.1 2e-14 seq50756 91.5 2e-13 seq2860 91.5 2e-13 seq40838 89.7 8e-13 seq24352 89.7 8e-13 seq19824 89.7 8e-13 seq49792 87.8 3e-12 seq35349 86.0 9e-12 seq19397 86.0 9e-12 seq35168 84.2 3e-11 seq25271 84.2 3e-11 >seq35091 Length=3122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 155832 tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| | ||||| ||||| || ||||| || || || ||| | || Sbjct 756 TTTGTGAAAACTCTAACTGGGAAAACAATCACATTGGACGTTGAGCCCAATGACACGATC 815 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||| |||||| ||||| ||||| || |||||||| ||||||||||| ||| |||| Sbjct 816 CAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATTCCTCCAGAACAGCAACGATTA 875 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | |||||| || || | |||||| || || || || |||| | ||||||| Sbjct 876 ATCTTTGCCGGAAAACAATTAGAAGATGGAAGGACCTTGAGTGACTATA--ACATCCAAA 933 Query 156012 GAG---GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||||| ||||||||||| | ||| |||| || Sbjct 934 AAGAAAGC-ACGCTGCATTTAGTGTTGCGTTTACGAGGTGG 973 >seq48206 Length=408 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/190 (72%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 155790 tttattg-tttataataaaaatttatgtaataaaatgcaaatatttattaaaaCATTGAC 155848 |||||| |||| ||||||| ||||| | || | || ||| | ||||| | || Sbjct 365 TTTATTTATTTAAAATAAAATTTTATACA-TATACAGC-----TTTGTGAAAACCCTAAC 312 Query 155849 TGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAA 155908 ||| ||||| || ||||| || || ||| ||| | || ||| |||||| || Sbjct 311 TGGGAAAACGATCACATTGGACGTTGAACCCAATGACACGATCCAAAATGTGAAAGCCAA 252 Query 155909 AATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCA 155968 ||| ||||| || |||||||| ||||||||||||||| ||||||| | |||||| || || Sbjct 251 AATTCAAGACAAGGAAGGCATTCCTCCAGAACAACAACGATTGATCTTTGCCGGAAAACA 192 Query 155969 GCTCGAAGAT 155978 | |||||| Sbjct 191 ATTAGAAGAT 182 >seq36324 Length=413 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 155788 tatttatt-gtttataataaaaatttatgtaataaaatgcaaatatttattaaaaCATTG 155846 |||||||| ||||| ||||||| ||||| | | | || ||| | ||||| | Sbjct 197 TATTTATTTGTTTAAAATAAAATTTTAT------ACGTATACATCTTTGTGAAAACCCTA 250 Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 ||||| ||||| || ||||| || || ||| ||| | || ||| |||||| Sbjct 251 ACTGGGAAAACGATCACATTGGACGTTGAACCCAATGACACGATCCAAAATGTGAAAGCC 310 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 ||||| ||||| || |||||||| ||||||||||||||| |||| || | |||||| | Sbjct 311 AAAATCCAAGACAATGAAGGCATTCCTCCAGAACAACAACGATTAATCTTTGCCGGAAGA 370 Query 155967 CAGCTCGAAGAT 155978 || | |||||| Sbjct 371 CAATTAGAAGAT 382 >seq48569 Length=404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/252 (70%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 155805 aaaaatttatgtaataaaatgcaaatattta--ttaaaaCATTGACTGGAAAAACTATTA 155862 |||||||| ||| ||||| ||||| || | ||||| |||||||||||||| || | Sbjct 55 AAAAATTTGTGTTATAAACA--AAATAGTTTCGTGAAAACTTTGACTGGAAAAACCATCA 112 Query 155863 CATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAG 155922 | || || || || ||| | ||| |||||||||| ||||| || ||||| Sbjct 113 CGTTGGATGTGGAGCCCAATGACACTATCCAAAACGTGAAAGCCAAAATCCAGGATAAGT 172 Query 155923 AAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCA 155982 |||| || ||||| || ||||| |||| || | |||||| ||||| | || ||| | Sbjct 173 AAGGTATTCCTCCTGAGCAACAGCGATTAATCTTTGCCGGCAAGCAATTGGAGGATGGCT 232 Query 155983 G-AACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGAT 156039 | | | | ||| ||||||| | ||||||| || || | ||||| ||||| | | Sbjct 233 GCACCCTGATC-GATTATA--ACATCCAAAAGGAAAGCACCTTGCATTTGGTGTTGCGTT 289 Query 156040 TAAGAGGCGGTG 156051 || |||| |||| Sbjct 290 TACGAGGTGGTG 301 >seq50756 Length=522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 155832 tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || |||||||||||||| || || || || ||| |||| ||| Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 |||||| ||| ||||| || ||||| |||||||| |||| ||||| ||| | ||| Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 |||| |||||| || || | || || | ||||| |||||||| || ||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 || || | ||||| || || | ||| |||| |||| || Sbjct 213 GAAAGCACCTTGCATTTGGTCTTGCGTTTACGAGGTGGTGCAA 171 >seq2860 Length=5989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155832 tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || ||||||||||| || || || || || ||| | |||| || Sbjct 1502 TTTGTGAAAACCTTAACTGGAAAAACCATCACGTTGGATGTGGAACACAACGATACCATC 1561 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||| |||||| ||||| || |||| ||||||| |||| || ||||| ||||| Sbjct 1562 CAAAATGTGAAAGCCAAAATTCAGTATAATTAAGGCATTCCTCATGAGTAACAACGATTG 1621 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| || ||||| | |||||| | | || ||| ||||||| ||||||||| Sbjct 1622 ATCTTTGCTGGAAAGCAATTGGAAGATGGCCGCACCTTAAGTGATTATA--ATATCCAAA 1679 Query 156012 --GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || | ||||| |||||||| || Sbjct 1680 AGGAAAGCACCTTGCATTTGGTGTTAAGCTT 1710 >seq40838 Length=12235 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 155827 aaata--tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGA 155884 ||||| ||| | || || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 3972 AAATAGTTTTGTGAAGACTTTGACCGGCAAAACCATTACATTAGATGTCGAGCCCAATGA 3913 Query 155885 TAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944 | || |||||| || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 3912 CACAATCCAAAACGTTAAGGCAAAAATTCAAGAAAAGGAAGGAATCCCTCCTGAACAACA 3853 Query 155945 AAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 | | ||||| | || || || || | |||||| | |||||| ||||| || || Sbjct 3852 ACGCTTGATCTTCGCAGGAAAACAATTGGAAGATGGTCGCACTTTAAGCGATTACAACAT 3793 Query 156005 ATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAA 156054 ||||| ||| | || ||||||||| | ||| | || || ||||| Sbjct 3792 TCAAAAAGAAAGCACGTTACACTTAGTGTTACGTTTACGTGGTGGCTTGTAA 3741 >seq24352 Length=2092 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 155832 tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| ||||||| || ||||||||||| || || || || || ||| | ||||| || Sbjct 159 TTTGTTAAAACCTTAACTGGAAAAACCATCACGTTGGATGTGGAACCTAATGATACGATC 218 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 |||||| ||| |||||| ||||| |||||||| || | ||| ||||| ||| | ||| Sbjct 219 CAAAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCTTCCTGAACAGCAACGTTTG 278 Query 155952 ATTTATGCCGGTAAGCA 155968 || | || || ||||| Sbjct 279 ATCTTTGTTGGAAAGCA 295 >seq19824 Length=8713 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||||||||| ||||| || || || ||| Sbjct 6328 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACAATTACGTTGGACGTTGAACCCAAC 6269 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| ||||| || |||||||| ||| Sbjct 6268 GACACCATCCAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGAGCAA 6209 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| || || || | || ||| | | ||||| || || || Sbjct 6208 CAACGTTTAATTTTTGCGGGAAAACAATTGGAGGATGGCCGCACTTTGAGTGACTACAAC 6149 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| || | ||||| ||||| | || ||||| || Sbjct 6148 ATCCAAAAAGAGAGCACTTTGCATTTGGTGTTGCGTTTGAGAGGAGG 6102 >seq49792 Length=5355 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 155838 aaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 || || ||||| || ||||||||||| ||||| ||||| || | || |||| Sbjct 851 AAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGACACGATCCAAAAC 910 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || || ||||| ||||| || ||||| || ||||| ||||||||| | ||||||| | Sbjct 911 GTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACAACGCTTGATTTTT 970 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCG 156017 || || || || | |||||| | | |||||| || || || || ||||| Sbjct 971 GCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACATTCAAAAAGAAAGC 1030 Query 156018 ACGCTTCATTTAGTGTTA 156035 ||| | ||||| |||||| Sbjct 1031 ACGTTACATTTGGTGTTA 1048 >seq35349 Length=2359 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 155839 aaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACG 155898 |||| || || ||||||||||| || || || || ||| || | ||| | ||||| Sbjct 240 AAACCTTAACAGGAAAAACTATCACGTTGGATGTGGAACCCAACGACACTATCTAAAACG 299 Query 155899 TGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATG 155958 || ||| ||| || || || |||||||| ||||| ||||||||| | ||||| | || Sbjct 300 TG--AAAGCCAATTCAGGACAATGAAGGCATTCCTCCTGAACAACAACGTTTGATCTTTG 357 Query 155959 CCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG---G 156015 |||| || || | || ||| | | ||||| ||||||| | ||||||| || | Sbjct 358 CCGGCAAACAATTGGAGGATGGCCGTACTTTGAGTGATTATA--ACATCCAAAAAGAAAG 415 Query 156016 CGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | || || ||||| || || | ||| || | |||| Sbjct 416 C-ACCCTGCATTTGGTCTTGCGTTTACGATGTGGTG 450 >seq19397 Length=4183 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155832 tttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| |||||||||||||| || || || || || || ||| | || Sbjct 3608 TTTGTCAAAACTTTGACTGGAAAAACAATCACGTTGGATGTGGAGCCCAATGACACCATC 3667 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 |||||||||| ||||| || ||||| ||||| || || || || |||||| ||||| Sbjct 3668 CAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGTATCCCCCCTGAGCAACAACGATTG 3727 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||| || ||||| | |||||| Sbjct 3728 ATCTTTGCAGGAAAGCAATTAGAAGAT 3754 >seq35168 Length=476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 155838 aaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 ||||| || ||||||||||| || || || || ||||| |||| || ||| Sbjct 275 AAAACTTTAACTGGAAAAACAATCACGTTGGATGTCGAGCCCAACGATACGATCCAGAAC 334 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 ||| || |||||| ||||| || |||||||| |||||||| | ||| ||||||| | | Sbjct 335 GTGGAATCTAAAATCCAAGACAATGAAGGCATTCCTCCAGAGTATCAATGATTGATCTTT 394 Query 155958 GCCGGTAAGCA 155968 ||||| ||||| Sbjct 395 GCCGGAAAGCA 405 >seq25271 Length=6169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 |||||||||| |||||| || ||||| |||||||| ||||| || ||| || | ||||| Sbjct 825 AAACGTGAAAGCTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAGCAATAACGTTTGAT 766 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 | ||| || ||||| | |||||| | | || ||| ||||||| ||||||||| Sbjct 765 CTTTGCTGGCAAGCAATTGGAAGATGGCTGCACCTTAAGTGATTATA--ATATCCAAA 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731407178944400