Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq45910 120 5e-22 seq45780 118 2e-21 seq35091 111 3e-19 seq40549 109 1e-18 seq19824 107 3e-18 seq50756 105 1e-17 seq19166 87.8 3e-12 seq49792 84.2 4e-11 >seq45910 Length=1805 Score = 120 bits (132), Expect = 5e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || || || || || ||||| |||||| || || ||||| || | | Sbjct 656 CGTAACACCAAGTGCAACGTGCTTTCTTTTTGAATATTGTAGTCGCTTAAAGTTCTTCCA 597 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| || |||||||| || | |||||| ||||| ||||||||||| ||| Sbjct 596 TCTTCCAATTGTTTTCCCGCAAAAATCAAGCGCTGTTGTTCAGGGGGTATTCCTTCCTTA 537 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| || || || | || || |||| |||||| Sbjct 536 TCTTGAATTTTCGCCTTGACATTTTGGATCGTGTCATTGGGCTCGACATCTAAGGTAATG 477 Query 172035 GTTTTACCAGTTAATGTTTTAATGAA 172060 |||||||||||||| || || | ||| Sbjct 476 GTTTTACCAGTTAAAGTCTTCACGAA 451 >seq45780 Length=809 Score = 118 bits (130), Expect = 2e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||| ||| |||||||| | || || ||||||||||||||| || || |||||| | Sbjct 524 TCACAAT-CCACCTCTTAAACGCAAGACTAAATGTAAAGTACTTTCCTTTTGAATATTGT 582 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| || | || |||| |||||||| || ||||| ||||| |||| |||||| | Sbjct 583 AATCGCTCAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCT 642 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 |||| || || ||||||||||| || ||||| || ||||| |||||||| | Sbjct 643 CAGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTAACATTTTGGATAGTATCGTTAG 702 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAAT 172061 ||||| || | || || || || || || || ||||| | |||| Sbjct 703 GCTCTACGTCCAACGTTATCGTCTTGCCGGTCAAGGTTTTCACGAAT 749 >seq35091 Length=3122 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || || ||||| || ||||| ||| || || || ||||| || | || Sbjct 1277 CGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCG 1218 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| || |||||||| || | ||||| ||||| || |||||||| ||| Sbjct 1217 TCTTCCAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTA 1158 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| ||| ||||| || || || | ||| || |||| |||||| Sbjct 1157 TCTTGAATTTTTGCTTTGACATTTTGGATCGTGTCGTTGGCTTCAACATCTAAGGTAATG 1098 Query 172035 GTTTTACCAGTTAATGTTTTAATGAA 172060 ||||| || || || || || | ||| Sbjct 1097 GTTTTGCCGGTCAAAGTCTTCACGAA 1072 >seq40549 Length=748 Score = 109 bits (120), Expect = 1e-18 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||| ||| |||||||| | || || || || ||||||||| || || ||| || | Sbjct 362 TCACAAT-CCACCTCTTAAGCGCAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGT 304 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | || || | || |||| |||||||| || ||||| ||||| |||| |||||| | Sbjct 303 AGTCGCTCAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCT 244 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 |||| || || ||||||||||| || ||||| ||| ||||| |||||||| | Sbjct 243 CAGGAGGAATGCCTTCTTTATCCTGAATTTTGGCTTTAACATTTTGGATAGTATCGTTGG 184 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAAT 172061 ||||| || | || || || ||||| || || ||||| | |||| Sbjct 183 GCTCTACGTCCAACGTGATCGTCTTACCGGTCAAGGTTTTCACGAAT 137 >seq19824 Length=8713 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || || || ||||| ||||| |||||| || || || || Sbjct 6102 CCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCACTC 6161 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || ||||||||||| || ||||||||||| | ||||| || || || Sbjct 6162 AAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAGGA 6221 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| ||| ||||| || || || | ||| || Sbjct 6222 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTCGTTGGGTTCAACG 6281 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| ||||| ||||| || || |||| ||| || ||||| Sbjct 6282 TCCAACGTAATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT--CTTTAGAAATA 171890 || |||| |||||| | | ||| | || ||||| ||||| || | |||| | | | Sbjct 6849 TTGCATAGCACCACCACGTAATCGCAGCACCAAATGCAAAGT-GCTTTCCTTTTGGA-TG 6906 Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 |||||||| |||| || | || |||||||| || || || || || || | ||| Sbjct 6907 TTATAATCGCTCAAAGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGT 6966 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 || ||||| || |||||||| |||||||| ||||| ||| || || || ||||| Sbjct 6967 TGCTCAGGGGGGATTCCTTCCTTATCTTGAATTTTGGCTTTCACGTTTTGGATTGTATCG 7026 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 | ||| || || | ||||||||||| || || ||||| || Sbjct 7027 TTGGGTTCCACATCCAACGTAATGGTTTTTCCGGTCAATGTCTT 7070 >seq50756 Length=522 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| | || || || ||||| || || ||||| ||| |||||||| Sbjct 175 ACCACCTCGTAAACGCAAGACCAAATGCAAGGTGCTTTCTTTTTGAATGTTATAATCGCT 234 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || |||||||||||||||| || |||||||| || | || || ||| | || Sbjct 235 CAAAGTACGACCGTCATCCAATTGTTTGCCGGCAAAAATCAAACGTTGCTGTTCATGAGG 294 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| ||||| || ||||| |||||| || |||||||| | ||| || Sbjct 295 AATGCCTTCATTATCCTGAATTTTGGCTTTTACGTTTTGGATAGTATCGTTGGGTTCCAC 354 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || | || || ||||| |||||||| ||||| Sbjct 355 ATCCAACGTGATAGTTTTTCCAGTTAAGGTTTT 387 >seq19166 Length=5045 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || || ||||| || ||||| ||| || || || ||||| || | | Sbjct 4763 CGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCA 4822 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| || |||||||| | | ||||| ||||| || |||||||| || Sbjct 4823 TCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGTTGTTCAGGGGGGATTCCTTCCTTG 4882 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| || || || || || || || | |||||| Sbjct 4883 TCTTGGATTTTCGCCTTGACATTTTGGATCGTGTCATTCGGCTCGACATCCAAGGTAATG 4942 Query 172035 GTTTTACCAGTTAATGTTTTAATGAA 172060 ||||| || || || || || | ||| Sbjct 4943 GTTTTGCCTGTCAAAGTCTTCACGAA 4968 >seq49792 Length=5355 Score = 84.2 bits (92), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCT--CTTTAGAAATATTATAATCTGATAAAGATCGTT 171912 || ||||||||||| || || || | |||| | || || ||||| |||| || | Sbjct 438 CGCAATACTAAATGCAACGT-GCTTTCCTTTTG-GATGTTGTAATCGCTCAAAGTTCTTC 381 Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 | || ||||| ||||| |||||||| ||||||| ||||| || ||||| || ||||| | Sbjct 380 CATCTTCCAACTGTTTTCCAGCAAAGATTAATCGTTGTTGCTCTGGTGGAATGCCTTCCT 321 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || || || || ||||| | || || |||| || | Sbjct 320 TGTCTTGGATCTTTGCCTTAACGTTTTGGATTGTATCATTGGGCTCAACGTCTAAGGTTA 261 Query 172033 TGGTTTTACCAGTTAATGTTTT 172054 ||||||| || || ||||| || Sbjct 260 TGGTTTTGCCCGTCAATGTCTT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904561136812200