Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18560 163 3e-34 seq18465 96.9 4e-14 >seq18560 Length=3023 Score = 163 bits (180), Expect = 3e-34 Identities = 366/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 1275529 CCGCCCTACTGGGGCCTGCGCGACTATGGCGTCGTCGGACAGATTGGCGCCGAGGACTCG 1275588 |||||||||||||| |||||||| || ||| ||| | ||| || || ||| | | Sbjct 533 CCGCCCTACTGGGGGCTGCGCGATTACGGCATCGAAGAACAAATCGGGCTTGAGAGCAC- 475 Query 1275589 CTTGACGCCTATG-TGGAGGGCCTCACCGTGGCCTT--TCGC-GAGGTGCGGCGCGTGCT 1275644 | || | | | || | | || |||||| | |||| ||||||||||||||||| Sbjct 474 CATGCCCCAGTTCCTGCATCGACTG---GTGGCCATCTTCGCCGAGGTGCGGCGCGTGCT 418 Query 1275645 GAGCGACGCCGGCACGCTGTGGCTCAATCTGGGCGACGCCTTTACGAGCGGCGGCCGCGC 1275704 || || | |||||| || ||||| || | ||||||| || || |||||| || | Sbjct 417 GACGGATGACGGCACCCTTTGGCTGAACATCGGCGACGGCTACACAAGCGGCAATCGAGG 358 Query 1275705 CACGCGCGCGCCCGACAAGAAGAATGCCGGCCGCGAGATGACCTACCGGCCGCCGACGCC 1275764 || || || ||||||||||| | | ||| | |||| | || || ||||| Sbjct 357 TTATCGAGCCCCGGACAAGAAGAACCCGGCCCGGGCGATGGACGTTCGACCTGACACGCC 298 Query 1275765 GCCGGGCCTCAAGGCCAAGGACTTGATCGGACTGCCGTGGCGCGTGGCCTTTGCCCTGCA 1275824 |||| | ||| | |||||||||||||| | |||||||| |||| || ||| |||| Sbjct 297 CGAGGGCTTGAAGCCAAAGGACTTGATCGGCATTCCGTGGCGGCTGGCGTTCGCCTTGCA 238 Query 1275825 GGCCGACGGCTGGTACCTGCGCTCGGACATTATATGGCACAAGCCCAACTGCCA-GCCCG 1275883 || || |||||||| |||||| |||||| | ||| ||||||| ||| || | ||||| Sbjct 237 GGATGATGGCTGGTATCTGCGCAGTGACATTGTGTGGAACAAGCCAAAC-GCGATGCCCG 179 Query 1275884 AGTCGGTGCGCGACCGTCCGACGCGCGCCCACGAGTATGTCTTTCTCTTCGCCAAATCAA 1275943 || || || || ||| | ||| | || |||| | | || | || |||| || Sbjct 178 AGAGCGTCAAGGATCGCCCGGCTCGCTCGCATGAGTTTCTATTCATGCTCACCAAGTCGG 119 Query 1275944 AGACCTACCACTATGACCACCAGGCCGTGCGCGAGCCCGCCGCGGGCGGGACCGGCATGC 1276003 ||| || |||| ||| |||||||| || ||||| || | ||||| ||| ||| Sbjct 118 AGAAGTATTACTACGACTGGCAGGCCGTCCGGGAGCCTGCGGACGGCGG---CGGTCTGC 62 Query 1276004 GCTCGCGTCGAACGGTGTGGGCCATCAACACCCAGCCCTACCCCGGCGCGCACTTTGCCA 1276063 | || || | || ||| | |||||| ||| | |||| || ||||| |||| Sbjct 61 GTAATCGCCGCTCAGTCTGGCATGTGAACACCAGGCCTTTTGCCGGTGCTCACTTCGCCA 2 Query 1276064 C 1276064 | Sbjct 1 C 1 >seq18465 Length=3287 Score = 96.9 bits (106), Expect = 4e-14 Identities = 289/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||| |||||||||| || || ||| | ||| | ||||||| |||||||||| Sbjct 880 CCGTCGGTACCGTTCTTGAGCCCACCGGGCAG-GACAGGCCGGACGCCAGCTCGCGGTGC 822 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATAA 1726852 ||||| |||||| || |||||||| | || ||||| | ||||||||||| || Sbjct 821 ACCTGCGACTCGGTGGTACGCGCGCCGATAGCACCCCAGCTGATCAGGTCTGCCAGGTAT 762 Query 1726853 GGGGCCACCAG-AGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAG 1726911 | | | | | | | || || ||| ||| | ||| || | | | | || Sbjct 761 TGCGGCGTGATCATGTCC-AGGAATTCGGTGGCAGCCGGC--AT-GCCCATGCTGTTCAG 706 Query 1726912 ATCGCGCAACAGGCGGCGCGAC-GCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970 | ||| |||||| || | | || ||| ||| | | | | | | ||| | Sbjct 705 GTTCAGCAGCAGGCGACGGCCCAGGCG-CAGACCGGTGTTGATGTCGAAGGTTTCGTTCA 647 Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030 ||| |||||| || || |||||||| || ||||| |||||||||||||||| | Sbjct 646 GGTGCGGGTCGTTGATTAGACCCTTCCAGCCTACGGTGGTGCGCGGCTTTTCGA-AGTCA 588 Query 1727031 CGCGCATGACCACGCAAAGCGCGTCGCCGACCT-CGTCTCGGACAAAGGCGCGCAGGCGT 1727089 ||||||| ||||| ||| |||||| | | | | ||| ||| ||| |||| || Sbjct 587 CGCGCATCACCAC---CAGCAGTTCGCCGGCGTACTTTTCGCGCAACGGC-AGCAGACGG 532 Query 1727090 CGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAGC 1727149 ||| | || || || |||||||||||||||| ||||| || | |||| |||| | Sbjct 531 CGGGCGTATTCTTCGGCGGCCGCCGGGTCGTGAATGGAACAGGGGC---CGATCACCACC 475 Query 1727150 AGCCGCCGGTCG 1727161 ||| | |||||| Sbjct 474 AGCAGGCGGTCG 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102969575521453