Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1806 134 2e-26 seq4974 86.0 8e-12 >seq1806 Length=4226 Score = 134 bits (148), Expect = 2e-26 Identities = 185/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 165956 GTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAAAAT 166015 ||||| |||||| ||| |||||| | ||| |||||| ||| | ||||| ||| || | Sbjct 2996 GTTGCACAATTATCTGGTTATGTTTCTGAAAAAACAGCATATCATCATGGAGAAGCAAGT 3055 Query 166016 TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTA 166075 |||||| ||||||| ||| || || ||| ||||||||||| |||||||||| ||| Sbjct 3056 TTATGTCAAACTATTATTGGTTTAGCACAAAATTTTGTTGGTTCAAATAATATTAATTTA 3115 Query 166076 CTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGCATCA 166135 | |||| | || ||||| || | ||| |||| |||||||||||| | | || Sbjct 3116 TTACAACCAAAAGGATTTTTTGGAACACGTTTAAAAGGTGGTAAAGATTCTAGTCAACCA 3175 Query 166136 AGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAGATGA 166194 | ||||||||||| || | ||| |||||| || | |||| |||| | | ||||| Sbjct 3176 CGTTATATTTATACTAATCTTACA-AAAATAACAAGAAATATTTTTATTTCACATGATGA 3234 Query 166195 CCCTATTTTAAATTAT 166210 ||||| | |||||| Sbjct 3235 TTCTATTCTTAATTAT 3250 >seq4974 Length=3366 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/122 (78%), Gaps = 5/122 (4%) Strand=Plus/Minus Query 194272 ATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT 194331 |||| |||||||||||| |||||||||| |||| |||||||| |||||||| ||| | Sbjct 199 ATGG-TCAAAAAGGAACGTGTGGTATGACTTATCGTCAAGAAGACATGCCATT--CAATT 143 Query 194332 -TCA-GGTATGGTACCAGATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCA 194389 ||| ||||| || ||| | ||||| ||||| |||| ||||| || | ||||||| Sbjct 142 GTCATGGTATTTGTCCTGATTTAATTATTAATCCTCATTGCATTCCATCTCGTATGACCA 83 Query 194390 TT 194391 || Sbjct 82 TT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632087897948920