Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19166 91.5 1e-13 seq19824 89.7 4e-13 seq45910 87.8 1e-12 seq49792 84.2 2e-11 seq35091 82.4 6e-11 >seq19166 Length=5045 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 || || || ||||| || ||||||||||||||| | || ||||| | || || || Sbjct 4968 TTCGTGAAGACTTTGACAGGCAAAACCATTACCTTGGATGTCGAGCCGAATGACACGATC 4909 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | || || ||| || ||||| ||||| | ||| || |||||| | || Sbjct 4908 CAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGAACAACAACGCCTG 4849 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 |||| ||| || ||||| |||| |||| ||||| | || ||||||||||||||| Sbjct 4848 ATTTTTGCAGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAACATTCAAAAA 4789 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| ||| |||||||| | |||| || || Sbjct 4788 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 4751 >seq19824 Length=8713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || ||||| ||||||||||| | || ||| || || Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || || | || || ||| || ||||| ||||| | || || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || ||||| | ||||||| ||||| || || |||||| Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||||||| ||| ||||| |||| || Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATT 6348 >seq45910 Length=1805 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 || || || |||||||| || |||||||||||| | || ||||| | || || || Sbjct 451 TTCGTGAAGACTTTAACTGGTAAAACCATTACCTTAGATGTCGAGCCCAATGACACGATC 510 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | || || ||| ||| || || ||||| | ||| || ||||| | | Sbjct 511 CAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGAATACCCCCTGAACAACAGCGCTTG 570 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 |||| |||||| ||||| |||| |||| ||||| | || ||||| ||||||||| Sbjct 571 ATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAATATTCAAAAA 630 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||||||| |||||||| | |||| || || Sbjct 631 GAAAGCACGTTGCACTTGGTGTTACGTTTGCGTGGTGG 668 >seq49792 Length=5355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 110277 AAATATTT--GTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334 ||||| || || || ||||| ||||||||||| |||||| | || ||||| |||| Sbjct 838 AAATAGTTTCGTGAAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGA 897 Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394 || || | ||||| ||| ||| ||||| ||||| | || || ||||| Sbjct 898 CACGATCCAAAACGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACA 957 Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454 | | | |||| ||| || ||||| | || |||| | | || | || |||||||| Sbjct 958 ACGCTTGATTTTTGCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACAT 1017 Query 110455 TCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||| ||||| || |||||||| | |||| || || Sbjct 1018 TCAAAAAGAAAGCACGTTACATTTGGTGTTACGTTTGCGCGGTGG 1062 >seq35091 Length=3122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 || || || ||||| |||||||||||||||||| | || || | |||| || || Sbjct 1072 TTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGATC 1131 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | || ||| || ||| || || ||||| | ||| || |||||| | | Sbjct 1132 CAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTTG 1191 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 |||| ||| || ||||| |||| || | ||||| | || ||||||||||||||| Sbjct 1192 ATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAAA 1251 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| ||| |||||||| | |||| || || Sbjct 1252 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412585954160837