Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq27925 100 2e-16 seq35091 96.9 2e-15 seq19397 96.9 2e-15 seq19824 93.3 3e-14 seq38859 87.8 1e-12 seq32733 86.0 4e-12 seq45910 84.2 1e-11 >seq27925 Length=8008 Score = 100 bits (110), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||||| ||||| || ||||| || || | | | || |||| ||| Sbjct 7909 ACCAAGTGCAATGTGCTTTCCTTTTGGATGTTGTAATCACTCAAGGTTCGACCATCCTCC 7850 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||||||||| ||||||| ||||||||| ||| | || | || |||||||| | Sbjct 7849 AATTGCTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGGAATGCCTTCCTTGTCTTGG 7790 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| || ||| | || |||| || ||||||||||| || | || || || | Sbjct 7789 ATTTTGGCCTTCACG--TTCTGGATCGTGTCGTTGGCCTCGACGTCCAACGTGATTGTTT 7732 Query 34947 TTCCCGTGAGGGTCTTTACAAAG 34969 |||| || | ||| || || ||| Sbjct 7731 TTCCAGTTAAGGTTTTCACGAAG 7709 >seq35091 Length=3122 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 || || ||||| || ||||||||||| || | | || | || || | ||| |||||| Sbjct 277 GTACTTTCCTTTTGGATGTTATAGTCACTTAAGGTTCGGCCGTCCTCTAATTGTTTTCCG 218 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || ||||||| ||||||||| ||| | || | || |||||||| | ||||| ||| Sbjct 217 GCAAAGATCAATCGTTGCTGCTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTGGCTTTC 158 Query 34901 ACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGG 34958 ||| | || |||| || || | |||||| || | ||||| || ||||| || | || Sbjct 157 ACG--TTCTGGATCGTGTCGTTAGGCTCGACGTCCAACGTTATTGTTTTTCCGGTCAAGG 100 Query 34959 TCTTTACAAAG 34969 | ||||| ||| Sbjct 99 TTTTTACGAAG 89 >seq19397 Length=4183 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||||| || || || ||||||||||| ||| |||| |||| || Sbjct 3807 ACCAAGTGTAAGGTGCTTTCTTTTTGGATGTTATAGTCGCTCAGGGTGCGGCCATCTTCT 3748 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||||||| || ||||||| |||||| || || | || | || ||||| || | Sbjct 3747 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGCTCAGGGGGGATACCTTCCTTATCCTGG 3688 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| ||| | || | ||||||| ||| ||||| | || || || ||| Sbjct 3687 ATTTTGGCTTTCACGTTTTGGATGGTGTCATTGGGCTCCACATCCAACGTGATTGTTTTT 3628 Query 34949 CCCGTGAGGGTCTTTACAAAG 34969 || || | || || |||||| Sbjct 3627 CCAGTCAAAGTTTTGACAAAG 3607 >seq19824 Length=8713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| || | |||||| ||||| || ||||||||||| | |||| | || ||| Sbjct 7180 ACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAGTCGCTCAAAGTGCGACCGTCTTCC 7239 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||||||| || |||||||| ||||| || ||| | || | ||||| || || | Sbjct 7240 AATTGCTTTCCTGCAAAGATCAGACGTTGTTGCTCTGGAGGAATTCCCTCTTTATCCTGA 7299 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| ||| | || | || |||| || ||||| | || ||||| ||| Sbjct 7300 ATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCACATCCAACGTAATGGTTTTT 7359 Query 34949 CCCGTGAGGGTCTTTACAAAG 34969 || || | ||||| |||||| Sbjct 7360 CCGGTTAAAGTCTTCACAAAG 7380 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||||| ||||| || |||||||| || | |||| |||| Sbjct 6873 CAGCACCAAATGCAAAGTGCTTTCCTTTTGGATGTTATAATCGCTCAAAGTGCGGCCATC 6932 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| ||||||||||||| ||||| || || | || | || ||||| || Sbjct 6933 CTCCAATTGCTTGCCGGCGAAGATCAAACGTTGTTGCTCAGGGGGGATTCCTTCCTTATC 6992 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| ||| | || | || |||| || ||||| | || ||||| Sbjct 6993 TTGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCACATCCAACGTAATGGT 7052 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAG 34969 ||||| || | ||||| |||||| Sbjct 7053 TTTTCCGGTCAATGTCTTGACAAAG 7077 >seq38859 Length=993 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 || || || || || ||||||||||| | | | || |||| || | ||||||||| Sbjct 494 GTACTTTCTTTTTGGATGTTATAGTCACTCAAGGTTCGGCCATCCTCTAATTGCTTTCCA 435 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || ||||||| ||||||||| ||| | || | || |||||||| | ||||| ||| Sbjct 434 GCAAAGATCAATCGTTGCTGCTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTC 375 Query 34901 ACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGG 34958 ||| | || || | || |||| ||||||||| | || || || ||||| || | || Sbjct 374 ACG--TTCTGGATTGTGTCGTTGGGCTCGACATCCAACGTGATTGTTTTTCCGGTTAAGG 317 Query 34959 TCTTTACAAAG 34969 | || || ||| Sbjct 316 TTTTCACGAAG 306 >seq32733 Length=1362 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||| | |||||| | ||| ||||||||||| || | | || | || |||| ||| Sbjct 248 GTGCAAGGTGCTTTTCTTTTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTCCAATTG 189 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| | ||| ||||||| |||| || ||| | || | || || ||||| | ||||| Sbjct 188 CTTGCAGGCAAAGATCAAATGTTGTTGCTCTGGGGGAATTCCTTCATTGTCCTGAATTTT 129 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 | ||||||| | || | ||||||| ||| ||||| | || ||||| |||||||| Sbjct 128 TGCTTTGACGTTTTGGATGGTGTCATTGGGCTCCACATCCAACGTGATGGTTTTTCCCGT 69 Query 34954 GAGGGTCTTTACAAA 34968 | || || ||||| Sbjct 68 CAAAGTTTTCACAAA 54 >seq45910 Length=1805 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||||| || || ||||||||||| || | | | | |||| || Sbjct 328 ACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATCACTCAAGGTCCTTCCATCTTCT 269 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||| ||||| || ||||| ||||||||||| ||| | || | || |||||||| | Sbjct 268 AATTGTTTTCCAGCAAAGATTAGTCGTTGCTGTTCTGGAGGAATGCCTTCCTTGTCTTGG 209 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||| || | |||| ||||||| || ||||| | || || || || Sbjct 208 ATCTTGGCTTTCACATTTTGGATCGTGTCATTGGGTTCAACATCCAATGTGATTGTTTTC 149 Query 34949 CCCGTGAGGGTCTTTACAAAG 34969 || || ||||| || |||||| Sbjct 148 CCAGTTAGGGTTTTCACAAAG 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325491119720771