Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq7374 289 7e-74 >seq7374 Length=3806 Score = 289 bits (320), Expect = 7e-74 Identities = 678/1005 (67%), Gaps = 30/1005 (3%) Strand=Plus/Minus Query 18571 TGAATCGCCACAGATAATCTAGACACTTCCGAGCCGCTGATAATATTGGTTTTCGTATTC 18630 ||||||||| | | | |||||||||| | |||| | || |||| || || ||||| || Sbjct 3740 TGAATCGCCCCGGCTTCTCTAGACACTCCGGAGCTGTTGGAAATACTGCTTCTCGTACTC 3681 Query 18631 AGTTGGTGGCATATGATCACTCGAACCATGCCGACGCTTACTGTTATAAAACATTTCGAT 18690 |||| || || | ||||||||||| ||||| ||| || ||||| ||||| Sbjct 3680 TACCGGTGACAGCCCATTTGTGGAACCATGCCGGCGCTTCGGGTTGTAGAACATCTCGAT 3621 Query 18691 GTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCG-TAGATCTTTTTCTTTATCC 18749 |||||| || || |||| || || |||| || || | ||| | ||| ||| || | Sbjct 3620 GTAATCGAATATGTCACGACGTGCCGCTTCCCG-GTCGTGATAGGTTTTTCGCTTGATAC 3562 Query 18750 GTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGC 18809 | || || ||||| | |||||| ||||| || || || || ||||| || ||||| |||| Sbjct 3561 GCTCCCGCTTCAGCAACTGGAAGAAACTCTCCGCCACGGCATTGTCGTGGCAGTTCCCGC 3502 Query 18810 GACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTG 18869 | || ||||| ||| | ||| || | |||| ||| ||||| || ||||| Sbjct 3501 GTCGACTCATGCTGGGCACCAAGTGATGGGCCTTCAAGAAGTCTTGCCAGTCGTAGCTAC 3442 Query 18870 TGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACA 18929 || ||||||| || || || ||||| || ||||||| | | || | || ||||| | Sbjct 3441 TGAACTGACTTCCCTGGTCGGAATGTACTAGCACCTCATGCTTGGGCTGGCGGCGCCATA 3382 Query 18930 CGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTC-ATCCGGGGCTGCATTGACCAG 18988 | ||||||| || |||||||| || | || | | || || || | |||||| |||||| Sbjct 3381 CCGCCATCAACAGGGCATTCAGAACCAACTC-TCTATCGATACGTGACTGCATCGACCAG 3323 Query 18989 CCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGA 19048 |||||||| | |||||||| ||||| | ||||| |||| |||| ||| || || || Sbjct 3322 CCAATAACCTGCCGCGAGAATAGGTCGAGGACCACCGCCAAGTACAACCATCCCTCATGC 3263 Query 19049 GTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTCCGAGTTGAACTGC 19108 || |||||||| ||||| ||||| ||||| || || ||| || ||| ||||||| Sbjct 3262 GTGCGGATGTACGTGATATCCGTCACCCAGACCTTATTCGGCGCCTCCACAGTGAACTGG 3203 Query 19109 CGCTGGAGCCTGTTGGGCGTCACGA-TGCTGGTTTCACCCTTACGTGCCCGTGGGCTAC- 19166 || || || ||| || | || | || || | || |||||| |||| | Sbjct 3202 CGTTGCAGATGGTTCGGTGCTACTACCGCCGGGCGGCCACTGCAATGCCCG-GGGCGTCG 3144 Query 19167 --GGTACCCGACCTGAGCCCTTATCCCGGCACGCTTCATCAGTC--GCCAGACACGGTTA 19222 |||| || ||| | | | || | |||||||||||| |||| | ||| Sbjct 3143 GTGGTAGCCCGTCTGCGAACGCAGACCCTCCTGCTTCATCAGTCGTGCCACGCGATGTTT 3084 Query 19223 ACTCCGCACTGTTGTCCGGTATCCCGCAGGTCGAGGTGGATCTTGCGATAACCATAAACG 19282 | ||||| | | ||| || |||||||| | || |||||| || ||||| || Sbjct 3083 A--CCGCAACGCTCTCCCTGTGCCTGCAGGTCGTCATAGACCTTGCGGTAGCCATAGACA 3026 Query 19283 CAACCCGACTCCAGCCAGAACTGCTTTATCAGCCCC-GTCAGCCTCAGGTCAGCATGATG 19341 | || ||| |||||| |||||| || ||||| || || | | |||| | | Sbjct 3025 CCGCCACTCTCTAGCCAGGCCTGCTTGATTTGCCCCAGTAAG-CGCTGGTCTTCGCGCGC 2967 Query 19342 CCGCCGTGAATCCG--GCTGCTGAAGCCAGGCGTAAAAACCACTCGGATGCACATCCAGC 19399 || |||||| || | ||| ||||||||| | ||||| ||||||||| ||| Sbjct 2966 ACGAGGTGAATGCGGAGAGGCT--TTCCAGGCGTAGTAGCCACTGGGATGCACAGCCATG 2909 Query 19400 ACCCGACAAAGCAGTCGGACAGGCCAGCAATGGGTGTT-----GTCACGGATAAAGGCGT 19454 | ||||| || |||| |||| | || | || | ||| ||||| ||||| | Sbjct 2908 GCACGACACAGACGTCGAACAG----GAAACTGCTGCTCATGAGTC-CGGATGAAGGCAT 2854 Query 19455 ACCTCAGTCGGACAGCTTTGCGAAGTACGCCGCTG-TAGATTCAATATGTCCCGTTCGTC 19513 |||| | ||||| ||| || ||||| || || | || | ||||| || || || Sbjct 2853 ACCTTACCCGGACTCCTTGGCAAAGTATGCGGCGGCCTTTTTTAGGATGTCGCGCTCCTC 2794 Query 19514 GGTAACCCGCTTCAGCTCTTTCTGGAGGCGTCGGATCTCAGCCTG 19558 ||| |||||||||||||| || ||| || || || || || || Sbjct 2793 GGTCACCCGCTTCAGCTCAGCCTTGAGACGCCGTATTTCGGCTTG 2749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127027310927760