Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq40398 93.3 2e-14 seq38750 84.2 8e-12 >seq40398 Length=733 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 || ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| ||||||| Sbjct 180 GTGTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTA 239 Query 50165 CCGAACTGCTCTACTCCGC 50183 ||| |||||| || |||| Sbjct 240 CCGGGCTGCTCCACCCCGC 258 >seq38750 Length=1150 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| || ||| |||| |||||||||| |||||||||| Sbjct 953 TGGTTGCGGGGGCTGGATTTGAACCAACGACCTTCAGGTTATGAGCCTGACGAGCTACCG 894 Query 50168 AACTGCTCTACTCCGC 50183 |||||| || |||| Sbjct 893 GGCTGCTCCACCCCGC 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181493628460758