Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1806 127 3e-24 seq4974 87.8 2e-12 >seq1806 Length=4226 Score = 127 bits (140), Expect = 3e-24 Identities = 181/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 163004 GTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAAAAT 163063 ||||| |||||| ||| |||||| | ||| |||||| ||| | || || ||| || | Sbjct 2996 GTTGCACAATTATCTGGTTATGTTTCTGAAAAAACAGCATATCATCATGGAGAAGCAAGT 3055 Query 163064 TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTA 163123 |||||| ||||||| ||| || || ||| ||||||||||| |||||||||| ||| Sbjct 3056 TTATGTCAAACTATTATTGGTTTAGCACAAAATTTTGTTGGTTCAAATAATATTAATTTA 3115 Query 163124 CTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCA 163183 | |||| | || ||||| || | ||| |||| |||||||||||| | || Sbjct 3116 TTACAACCAAAAGGATTTTTTGGAACACGTTTAAAAGGTGGTAAAGATTCTAGTCAACCA 3175 Query 163184 AGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAGAAGAAGATGAC 163243 | ||||||||||| || | | |||||| || | |||| |||| | | ||||| Sbjct 3176 CGTTATATTTATACTAATCTTACAAAAATAACAAGAAATATTTTTATTTCACATGATGAT 3235 Query 163244 CCTATTTTAAATTAT 163258 ||||| | |||||| Sbjct 3236 TCTATTCTTAATTAT 3250 >seq4974 Length=3366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 193482 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCA-GG 193540 ||||||||||| |||||||||| |||| |||||||| |||||||| | | ||| || Sbjct 194 CAAAAAGGAACGTGTGGTATGACTTATCGTCAAGAAGACATGCCATTCA-ATTGTCATGG 136 Query 193541 TATGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 ||| || ||| | ||||||||||| |||| |||||||| | ||||||||| Sbjct 135 TATTTGTCCTGATTTAATTATTAATCCTCATTGCATTCCATCTCGTATGACCATT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634774190766520