Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1806 131 2e-25 seq4974 87.8 2e-12 >seq1806 Length=4226 Score = 131 bits (144), Expect = 2e-25 Identities = 184/256 (72%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 165166 GTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAAAAT 165225 ||||| |||||| ||| |||||| | ||| |||||| ||| | ||||| ||| || | Sbjct 2996 GTTGCACAATTATCTGGTTATGTTTCTGAAAAAACAGCATATCATCATGGAGAAGCAAGT 3055 Query 165226 TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGCATTA 165285 |||||| ||||||| ||| || || ||| ||||||||||| |||||||||| ||| Sbjct 3056 TTATGTCAAACTATTATTGGTTTAGCACAAAATTTTGTTGGTTCAAATAATATTAATTTA 3115 Query 165286 CTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGCATCA 165345 | |||| | || ||||| || | ||| |||| |||||||||||| | || Sbjct 3116 TTACAACCAAAAGGATTTTTTGGAACACGTTTAAAAGGTGGTAAAGATTCTAGTCAACCA 3175 Query 165346 AGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAGATGA 165404 | ||||||||||| || | ||| |||||| || | |||| |||| | | ||||| Sbjct 3176 CGTTATATTTATACTAATCTTACA-AAAATAACAAGAAATATTTTTATTTCACATGATGA 3234 Query 165405 CCCTATTTTAAATTAT 165420 ||||| | |||||| Sbjct 3235 TTCTATTCTTAATTAT 3250 >seq4974 Length=3366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 193035 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACT-TCA-G 193092 ||||||||||| |||||||||| |||| |||||||| |||||||| ||| | ||| | Sbjct 194 CAAAAAGGAACGTGTGGTATGACTTATCGTCAAGAAGACATGCCATT--CAATTGTCATG 137 Query 193093 GTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 |||| || ||| | ||||||||||| |||| ||||| || | ||||||||| Sbjct 136 GTATTTGTCCTGATTTAATTATTAATCCTCATTGCATTCCATCTCGTATGACCATT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628132011978240