Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq39255 185 6e-41 seq26427 129 4e-24 seq1205 125 5e-23 seq9962 122 7e-22 seq23503 109 4e-18 seq2606 109 4e-18 seq25151 100 2e-15 seq18966 87.8 1e-11 >seq39255 Length=1009 Score = 185 bits (204), Expect = 6e-41 Identities = 605/918 (66%), Gaps = 44/918 (5%) Strand=Plus/Minus Query 281586 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGT 281645 ||| ||||||| | | |||| | || ||| | || | || | |||||||||||||| | Sbjct 1009 CAGATTGATTACCAGCATAAATGGTGAATGTTTCGGTTCTTCTGCAAGGAATTGTTGTAT 950 Query 281646 TTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAG 281705 ||| | ||| || || ||||| | |||||| || ||||| | || | || | || Sbjct 949 TTCGAGGAATCATTTTTGTCATCACACCACCCGCAGTTTCAATTCCCAATGACAATGGCA 890 Query 281706 TGACATC--AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAAT 281760 | ||| || || |||| | || || || ||| | |||| | | ||| Sbjct 889 TAACACAGAAAATACAACAAAAA----AAATTGTTG-TCATTCACACCATTAGTCAAAAT 835 Query 281761 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 281820 |||||| | || ||||||| ||||||| ||||||||||||||| | | | | || Sbjct 834 TTGAGCTTGAGTCGCTGCACCATGTGCAACAACTTCATCAGGATTAATACTGTTACAAAG 775 Query 281821 TTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTT----ACCTTAGGAATACGAGA 281874 || ||| ||||| || | | |||| | |||| | || |||||||||| Sbjct 774 TTCTTTTCCATTAAAGTATTCCTTGA------TCATCTTTTGCAATTTTGGAATACGAGT 721 Query 281875 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 281934 |||||| ||| ||||||||| |||| | | |||| | | | | ||| || Sbjct 720 TGATCCACCAGATAATACAATATCATCAATATCCAATTTGCCTATTCCAGTATCTTGCAA 661 Query 281935 AACTTTTTCAACGGGTTCAAGACCAG-CTCTAAAC-AAGTC-TGAACAAAGTTCTTCGAA 281991 | |||| | | |||| | ||| | | || ||| | || |||| |||||| || Sbjct 660 TATTTTTGCGATATAATCAA-AGCAGTCACGGAAGTAAGGCATGCACAA--TTCTTCAAA 604 Query 281992 TTTAGCTCTAGTAAGAGTGACATT-ATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 ||| ||| || | | | || | ||||||| ||||| | | |||| | ||| | Sbjct 603 TTTGGCTTGTGTGATCGA-AGATACAAAATCAATGCCTTCATGAAGACAATCTATTTCTA 545 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 | || | | |||| | |||| || || ||||| ||||| |||||| | |||||| Sbjct 544 TAGTTGCTCGAGTTGCAGAACTTAATGTTCGTTTTGCACGCTCACATTGTAATTTTAGTC 485 Query 282111 TTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTC 282168 || | ||| | || ||| | | | ||| ||||| ||| | || || || || Sbjct 484 TTTTCATTGCTAT--CTTATTTTGGGTAATATCAAGTTTATGCTTTTTTTTAAATTCATC 427 Query 282169 AACACACCATGTTAC-AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTG 282227 | || | |||| | || | | |||||||||||||||||||| || ||||| | || | Sbjct 426 AGCAAAAAATGTCAATAATATG-TTATCAAAATCTTCACCTCCTAAATTAGTGTCACCAG 368 Query 282228 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTC 282287 || || | |||| || | |||||| |||| ||||| | || |||| | || Sbjct 367 CTGTTGCCTTCACTTCAAATACTCCATCATCAATGGACAATAAAGATACATTAAACGTAG 308 Query 282288 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--TGGT--TTTTATCAAGA 282343 |||||||||||||||| | ||| | |||| || ||| || | |||| || | Sbjct 307 TTCCACCCATATCAAAAACCA--ACA--CGTTTCGTTCTCTATTGCTCTTTTTGTCCAAT 252 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || || | || || || |||||||||||||| || | ||| || || | || || Sbjct 251 CCGTATGCTATTGCTGCTGCTGTTGGTTCATTAATGATACGCAACACTTTTAATCCTACA 192 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||||||||||| || ||||||||||| ||| || || || || ||||| || Sbjct 191 ATTGTTCCTGCATCTTTTGTTGCTTGTCTTTGACCATCATTGAAGTACGCTGGAACTGTT 132 Query 282464 ATAACGGCATCTGTTACT 282481 || || |||| ||||| Sbjct 131 ATGACTGCATTACTTACT 114 >seq26427 Length=9375 Score = 129 bits (142), Expect = 4e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||||||||| || | || || ||||||| | | ||||| | |||||||||||| Sbjct 1525 CGTTTTGCATCGAAGACTGTGTTTTTTGGATTCATGGGCGCTTGGTTTTTGGCTGCATCG 1466 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 |||| || | | ||||| |||||||| | ||| |||||||| || | ||| | || | Sbjct 1465 CCAACCAAACGCTCTGTATCTGTAAAGGCAACGTATGATGGTGTAATTCGACTGCCCATA 1406 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || || ||||||||||| ||||| || || || ||| || ||||| | | |||||| Sbjct 1405 TCGTTTGCAATAATTTCCACTTTGCCGTTAAGCATTACTCCGACACATGAATACGTTGTT 1346 Query 282860 CCTAAATCAATACCAA 282875 || |||||||| |||| Sbjct 1345 CCCAAATCAATCCCAA 1330 Score = 123 bits (136), Expect = 2e-22 Identities = 259/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| | |||||| || || || | ||||||||||||||||||||||| || |||| Sbjct 3421 CACATTCAAAATACCGTTTGCGTCAATTTCAAATGTGACTTCAATTTGAGGAACTCCTCG 3362 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTAT-TATTATCTTTAGTGA 281549 ||| || ||||| || |||| ||| |||||| || || |||| ||| ||| | Sbjct 3361 AGGAGATGGAGGGATTCCAGTTAAATCGAATTTTCCCA-ATAATATATTGTCTGCAGTCA 3303 Query 281550 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||| || | | | |||||| || ||| |||||| ||| ||| || Sbjct 3302 TTGCACGTTCTCCTTGATAGACTTGGATCAACACAGCAGGTTGATTGTCTTGATATGTGC 3243 Query 281610 TAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 | |||||| |||||||| ||||| || |||| ||||||| | |||||||| | Sbjct 3242 TGAATACTTGTGATTTTTTTGTTGGAATGACTGAGTTTTTATCAATCAATTTGGTCATCA 3183 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT-T 281728 ||| || | ||||| | ||| | || || || || ||||| | || | |||||| Sbjct 3182 CACCTCCGACAGTTTCAATACCCAATGACAGTGGTGTTACATCCAATA--ATAATATTCC 3125 Query 281729 TGAAGTTTTTCATC-AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787 || |||| | | || | || | || || |||| | ||||| ||| |||| Sbjct 3124 TGTTGTTTCACCGCTTGTATCGCCGCTCAATATTGCACCTTGGACTGCAGCTCCAAATGC 3065 Query 281788 AACAGCTTCATCAGGATTAA 281807 ||| |||||||| || |||| Sbjct 3064 AACGGCTTCATCTGGGTTAA 3045 >seq1205 Length=2342 Score = 125 bits (138), Expect = 5e-23 Identities = 311/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 281446 ATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGAT 281505 ||||||||||||||| || ||||||||||| |||| || ||| | ||||||||| || Sbjct 1080 ATTGGCATCCAAATCGAAGGTGACTTCAATGCGAGGAACACCTTTTGGAGCAGGTGAAAT 1139 Query 281506 CCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 | ||| ||| | ||| || ||| || || || |||| || | ||||| Sbjct 1140 TTCCGTCAATCCGAATTTGGCCAACAGATGATTGTCCTTGGTCAATTGTCTATTTCCCTC 1199 Query 281566 GAAAATTTGGATAGTAACTA--CAGTTTGATTATCTGAATAAGTTGTAAATAC-TCTGGA 281622 | | | ||| || |||| | ||| ||||||||| | |||||| || || | | || | Sbjct 1200 GTACACTTGAAT--TAACAAGCCAGATTGATTATCAGCATAAGTGGTGAACATATGTGTA 1257 Query 281623 TTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGT 281682 |||| ||||| || | | || | | || | || ||||| | |||||| || || Sbjct 1258 GTTTTG-CAAGGGATGGATTGATTGCGAGTGATCAATTTAGTCATCACACCACCCGCAGT 1316 Query 281683 TTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTTCA 281740 ||| | || | || | |||| ||||| | | || | || |||| || || Sbjct 1317 TTCAATTCCCAATGACAATGGAGCCACATCCAACAACACCACATCATTTGCCCCATT-CA 1375 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | ||| | ||| |||||| ||||||||||| |||||| ||||||| ||||||||| Sbjct 1376 TTTGTTCTCCATTCAA-AATAGCAGCTTGAATAGCGGCACCAAATGCAACGGCTTCATCA 1434 Query 281801 GGATTAACAGT--TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 |||| | ||| | || |||| ||| ||||| || | | || | |||||||| Sbjct 1435 GGATGGATAGTCGTGCA--AAGTTCTTTTCCATTAAAGTACTCCTTAATCAATTGTCTTA 1492 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 | || ||||| |||| || || || || |||| || |||| Sbjct 1493 CTTTCGGAATTCGAGTGGACCCACCGACCAATATGATATCAT 1534 >seq9962 Length=3428 Score = 122 bits (134), Expect = 7e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||| |||||||||| || || ||||||| | || ||||| | |||||| ||| Sbjct 3415 CGTTTCACATCAAAAATTGTGTTTTTTGGATTGATTGTGGCTTGGTTTTTGGCCACATTG 3356 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 || |||| | ||| | |||||||| | ||||||||| || ||| | || | || Sbjct 3355 CCGATCAAGCGCTCTTTTTCTGTAAAAGCAACATATGACGGTGTTTTTCGTTCGCCCATT 3296 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || |||| ||||||||| ||||| ||||| || || |||||||| | | |||||| Sbjct 3295 TCGTTCGGAATAATTTCCACTTTGCCATTAAGCGTCACTCCTACACATGAATACGTTGTT 3236 Query 282860 CCTAAATCAATACCAAT 282876 || |||||||||||||| Sbjct 3235 CCCAAATCAATACCAAT 3219 >seq23503 Length=11782 Score = 109 bits (120), Expect = 4e-18 Identities = 213/311 (68%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 |||||| ||||| |||||| | ||| ||||| |||||||||||||| | ||||||||| Sbjct 8566 TTTATCTTTGGCAGACACATTCAAAATGCCATTTGCATCCAAATCAAA-GAGACTTCAAT 8624 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT-TAAATGTTCCCAGATTAT 281534 ||| || |||| ||||||||||||| || |||||| ||||| |||| || | Sbjct 8625 TTGTGGACGTCCTCGAGGAGCAGGTGGGATTCCAACCAAATCGAAATG-GCCCAAATATT 8683 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 |||| || || | || |||||| || | ||| || || ||| || |||| Sbjct 8684 TATTGTCAGCAGCCATTTCTCGTTCTCCTTGATAAACTTTAATGCCCACTTGTGTCTGAT 8743 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||| | ||| |||||||| ||||| || ||||| | || ||| | |||| Sbjct 8744 TATCAGCGGCAGTGCTAAATACTTCCGATTTCTTTGTCGGAATAGCAGTATTTTTCTCAA 8803 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | || | | |||||| |||||| | ||| | || | ||||| ||||||| Sbjct 8804 TCAAACGTGTAAATACACCACCCATTGTTTCAATACCCAATGACAATGGAGTAACATCAA 8863 Query 281715 CTAGGACAATA 281725 | |||||| Sbjct 8864 TCAACACAATA 8874 >seq2606 Length=6856 Score = 109 bits (120), Expect = 4e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 || |||||||||||||| || || ||||||| | | |||||||| |||||| || || Sbjct 2843 CGCTTTGCATCAAAAATTGTGTTTTTTGGATTCATGGGAGCTTGATTTTTGGCCGCGTCG 2902 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 || | || | | ||||| |||||||| | ||| || || || ||| | || | || Sbjct 2903 CCGACCAAACGCTCTGTTTCTGTAAAGGCAACGTAAGAGGGTGTTATTCGGCTGCCCATG 2962 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || || | ||| ||||| ||||| ||||| || ||| || ||||| | | || ||| Sbjct 2963 TCGTTTGGAATTATTTCCACTTTGCCATTGAGCATTACTCCGACACATGAATACGTCGTT 3022 Query 282860 CCTAAATCAATACCAATAGCAATTTTATCT 282889 || ||||| || |||| | |||||||| Sbjct 3023 CCCAAATCGATCCCAACCACGTTTTTATCT 3052 Score = 87.8 bits (96), Expect = 1e-11 Identities = 165/242 (68%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 |||| || | |||||||||||| |||||||| | || | || ||| ||| ||| Sbjct 2066 ACAAACCGTTCATCAAAATCTTCTCCTCCCAAATGCGTGTCACCACTCGTTGCTACGACT 2125 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | ||| || || | || ||| | | | || || ||| ||||| |||| ||| Sbjct 2126 TCAAACACTCCTTCATCCAAAGTCAACAAACTGACGTCGAAGGTGCCACCTCCCAAGTCA 2185 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || | || | ||| | ||||||| | |||||||| | || || |||| || ||| Sbjct 2186 AACACAATGATGTTCGTGTCTTTGTAT---TTTTTATCTAAGCCGTAAGCAAGTGCGGCA 2242 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || || ||||| || || | || || | || || || ||| ||||||| ||||| Sbjct 2243 GCCGTAGGCTCATTGATGATGCGCAGCACTGTTAGTCCGGCTATTGTTCCTGCGTCTTTC 2302 Query 282422 GT 282423 || Sbjct 2303 GT 2304 >seq25151 Length=1420 Score = 100 bits (110), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||| |||||||||| || || |||||| | |||||||| ||||||| || Sbjct 1233 CGTTTCACATCAAAAATTGTGTTTTTTGGATCTATGATAGCTTGATTTTTGGCTAACTCG 1292 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 || |||| | ||| | |||||||| | ||||||||| || ||| | || | || Sbjct 1293 CCGATCAAGAGCTCTTTTTCTGTAAAAGCAACATATGACGGCGTTTTTCGCTCGCCCATT 1352 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 || |||| |||||||| ||||||||||| || || |||||||| | | |||||| Sbjct 1353 TCGTTCGGAATAATTTTCACTTTACCATTAAGCGTCACTCCTACACATGAATACGTTGTT 1412 Query 282860 CCTAAATC 282867 || ||||| Sbjct 1413 CCCAAATC 1420 >seq18966 Length=8436 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 281758 AATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT--CA 281815 ||| |||| ||||||||| ||||| ||| |||||||||||||||| ||| ||||| || Sbjct 7328 AATTGCTGATTGAATAGCTGCACCGTATACAACAGCTTCATCAGGGATAATAGTTTTGCA 7269 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875 | | |||| ||||| ||| | || || | |||| ||| | |||||||||| | Sbjct 7268 -AGACTCTTTT-CCATTAAAATATTTCTTAATTAATTGTTGTACTCTTGGAATACGAGTT 7211 Query 281876 GATCCTCCAACTAATACAA 281894 ||||| |||||| | |||| Sbjct 7210 GATCCACCAACTGACACAA 7192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738135892818834