Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19824 89.7 5e-13 seq38859 86.0 6e-12 >seq19824 Length=8713 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| |||| || || || || || ||||||| || ||| ||| ||| || | Sbjct 6585 AAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCTCAAAGTGCGACC-GTCTTCTAA 6643 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | || || || || ||||| |||||||||||||| ||| Sbjct 6644 TTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGGAATGCCTTCCTTGTCTTGGAT 6703 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | | || || ||| |||| ||||| || | |||| |||||| || Sbjct 6704 TTTTGCCTTCACGTTTTGAATTGTATCGTTGGGTTCCACATCCAACGTGATGGTTTTTCC 6763 Query 133634 GGTCAGAGTTTTTACGAA 133651 ||||| |||||| ||||| Sbjct 6764 GGTCAAAGTTTTCACGAA 6781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||| || || ||||| |||| || || ||||| | || ||||| || | Sbjct 6369 TCTTTTTGGATGTTGTAGTCGCTCAAAGTTCTTCCATCCTCTAATTGTTTGCCGGCAAAG 6428 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || || || || || || || ||||||||||| ||| || ||||| | Sbjct 6429 ATGAGACGTTGTTGCTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACATTT 6488 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 | | |||||| |||| |||||||| | || | |||||| ||||||| ||||| || Sbjct 6489 TGGATGGTGTCGTTGGGTTCCACGTCCAACGTAATGGTTTTTCCGGTCAAGGTTTTAACA 6548 Query 133650 AAAATCTGCATGGC 133663 || || |||||||| Sbjct 6549 AAGATTTGCATGGC 6562 >seq38859 Length=993 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | ||||| || || || || || ||||||||||| |||| Sbjct 769 TGCTTTCCAGCAAAGATTAAGCGCTGTTGCTCTGGTGGAATACCTTCCTTGTCTTGGATC 710 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | | | |||||| ||||||| ||||| | ||| | |||||||||| Sbjct 709 TTTGCCTTGACGTTTTGGATCGTGTCATTGGGCTCAACGTCTAAGGTAATGGTTTTGCCG 650 Query 133635 GTCAGAGTTTTTACGAA 133651 ||||| || || ||||| Sbjct 649 GTCAGGGTCTTCACGAA 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483113773407160