Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1806 174 4e-38 seq146 158 3e-33 seq7650 138 3e-27 seq1807 113 1e-19 seq46692 105 2e-17 seq21232 98.7 2e-15 seq24876 95.1 3e-14 seq19760 87.8 4e-12 seq9721 84.2 5e-11 >seq1806 Length=4226 Score = 174 bits (192), Expect = 4e-38 Identities = 784/1213 (65%), Gaps = 92/1213 (8%) Strand=Plus/Plus Query 279192 ATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAA 279251 |||||||||| ||||||||||| |||| ||| || | |||| | | ||| ||| | || Sbjct 2223 ATAAATATGGAATATTTCCTTTACGAGGAAAATTATTAAATGTTAGAGATGAAAATA-AA 2281 Query 279252 CACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACAAATAT 279311 | ||||| ||||||| ||| ||| | ||||||||||||| ||| Sbjct 2282 C----------TTAAAATAAGTAAA----AATAAAGAAATATCTAATTTAAAACAATTAT 2327 Query 279312 TGGGATTA-GAGCA-AGGTAAAAAATAC------AAAGATACATCAAGT-TTACGATATG 279362 | |||||| ||| | | || || ||| ||| ||| | || ||| |||||| Sbjct 2328 TAGGATTAAGAGAAGATGTTAATTATAATGATTTAAATATATTTGAAACATTAAGATATG 2387 Query 279363 GTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATAC 279422 ||||| || || ||||||| ||||||| ||||||||||| || ||||||||||| Sbjct 2388 AAAAAATAATGATAATGACAGATCAAGATTATGATGGAAGTCATATAAAAGGATTAATTA 2447 Query 279423 TTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAATCAAAA----TTTTGTAAGTGTG 279478 | |||| || ||| | ||||||||||| | ||| || | |||| ||| Sbjct 2448 TAAATTATTTTCATAATGGATGGCCAGAATTAAT-AATAAAGAATGGTTTTTTAACACAA 2506 Query 279479 TTTCAAACACCAATTATTAAGG---CAACTAAAGGTAAAAA--------AGAAGAAG-TA 279526 ||| ||||||||| ||| || ||| ||| ||| || | || || || Sbjct 2507 TTTATAACACCAATAGTTATGGTATCAAAAAAACATAACAATAATAATAATAATAAAATA 2566 Query 279527 T---TTTATTC-ATTGCAGAAGTTTGAACAATGGAAAGATTCAGTTGAGAATTCAGCCTC 279582 | ||||| | ||| ||||| | |||| ||||||| | | | | | ||| | Sbjct 2567 TCTTTTTATACTATTCCAGAA-TATGAAATATGGAAACAATTACATAATAATGGAAAAGG 2625 Query 279583 ATTCCATACCAAGTATTTTAAAGGTTTAGCAACATCC--AATACTAAGGAAGCAAAAGAA 279640 | || | |||| |||||| | | || | |||| | ||| |||| || Sbjct 2626 TTGGATTATTGAATATTATAAAGGACTTGGTACTTGGGAAATATCAC--AAGGAAAACAA 2683 Query 279641 TATTTTAAAAAATTAACACTTCA-------GAATTTTAATGCTAATGAGAAATCAACTA- 279692 |||||||| |||||| || || |||||| ||| ||| ||| || || | Sbjct 2684 CATTTTAAACAATTAAAACAACATTGTATTGAATTTAAATA-TAA--AGATATTAAAGAT 2740 Query 279693 -ATGC-TCTTGA--TAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGGTTG 279748 ||| || | | |||||| || | ||| |||| |||| | ||| | ||||| Sbjct 2741 GATGAATCATTAATTAAAGCATTTGATAAAAAAAAAGCTGCTGATAGAAAACAATGGTTA 2800 Query 279749 AGAAATTAT-GATAAGGA--TGATATAATTGATGAAGAACAAACTAATGTGACTTGTGAA 279805 | | ||| | | || | || ||| | | ||||| ||||| || | || Sbjct 2801 GCAGAATATCGTTCTGGTACTTATCTAAATTTTAAAGAA------AATGTTTATTATCAA 2854 Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || ||| | |||||||| | || | | ||| | | ||| | | | ||||||| Sbjct 2855 GATTTTGTAAATAAAGAATTAATATTATATGCTATTGAAGATAATAAAAGAAGTATTCCT 2914 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTAT--ATTCAGTTGTTTCAAAA 279923 | | || ||||| || ||||||||||| | || ||||| ||||| || || | Sbjct 2915 TCTATTATTGATGGATTTAAACCTTCACAAAGAAAAATTATTTATTCA--TGCTTTTTAC 2972 Query 279924 GAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAG 279983 | ||||| | || ||||||||||||| || ||| | ||||||||||| ||| | ||| Sbjct 2973 GTAAATTAATTAATAAAATTCGTGTTGCACAATTATCTGGTTATGTTTCTGAAAAAACAG 3032 Query 279984 GTTATCATCACGGTGAAGC--GTCTCT-TCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 |||||||| || ||||| || | | |||| ||||| | ||| | || ||| ||| Sbjct 3033 CATATCATCATGGAGAAGCAAGTTTATGTCAAA---CTATTATTGGTTTAGCACAAAATT 3089 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | |||||| || | ||| | | |||||| || ||||| | ||| | Sbjct 3090 TTGTTGGTTCAAATAATATTAATTTATTACAACCAAAAGGATTTTTTGGAACACGTTTAA 3149 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAA 280160 | ||| |||||| | || | ||||| || |||| |||| || | || |||| Sbjct 3150 AAGGTGGTAAAGATTCTAGTCAACCACGTTATATTTATACTAATCTTACAAAAATAACAA 3209 Query 280161 ACAAGTTATTTATCAATTCTGATAATGCTTC-ATTAG--AGTGGCTAGAGGATGATGGTC 280217 || | ||||| ||| || ||| ||| ||| | | |||| |||||||| Sbjct 3210 GAAATATTTTTAT---TTCACATGATGATTCTATTCTTAATTATTTAGATGATGATGGAT 3266 Query 280218 TTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTC 280277 || | | ||||| | |||| ||| ||||| || ||||| |||||||||||||| | Sbjct 3267 TTCCAGTAGAACCTGATTTTTATATTCCTATTATACCAATGATACTTGTTAATGGTGCAC 3326 Query 280278 AAGGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATTATAT 280337 |||| ||||| | |||||| ||| | ||| || | | ||||||| |||||||| | Sbjct 3327 AAGGTATTGGTAATGGTTATAGTACTTTTATACCTAATTTTAATCCAAAAGATATTAT-T 3385 Query 280338 TACAA-ATTCGTA 280349 | || ||||||| Sbjct 3386 CATAATATTCGTA 3398 >seq146 Length=10098 Score = 158 bits (174), Expect = 3e-33 Identities = 243/347 (70%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| || || ||||| || ||| | || || ||||| || || || |||||||| || || Sbjct 9727 AAAAGGATCGTTTGCAATTTATTTGGAGCCATGGCACTCTGACATCTTTGAATTTTTGGA 9668 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | || |||||||| ||| |||||| | |||||||| ||||| ||| || | |||| Sbjct 9667 CTTGCGGAAAAATCACGGAACGGAAGAAGAGAGAGCACGAGATTTGTTTCTTGGACTGTG 9608 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 ||| | ||||| || ||| ||||||| || | || || ||| | | |||||||| Sbjct 9607 GATCCCCGATTTGTTTATGCAACGTGTGAAAAGTGACGGGATATGGAGTTTGATGTGTCC 9548 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 || | ||||||| ||| || | || ||||| |||||||| || ||| ||| Sbjct 9547 AAATGAGTGCAAAGGTCTATTTGAAGTGTGGGGCAAAGAATTTGAAGAGCTCTACATAAA 9488 Query 110987 ATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAAT 111046 | ||||| | |||||||||||||| ||| | |||| |||||||||| | || Sbjct 9487 CTTCGAAAAGAAGGGCAAGTTTCGCAAGCAAGTGAAAGCTAGAGAACTTTGGAGCTCCAT 9428 Query 111047 CCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAG 111093 | | || ||| | |||||||| || ||||| || | || |||| Sbjct 9427 TTTACAGTCTCAAATCGAAACTGGCACCCCTTACATGGTTTACAAAG 9381 >seq7650 Length=7814 Score = 138 bits (152), Expect = 3e-27 Identities = 252/368 (68%), Gaps = 1/368 (0%) Strand=Plus/Minus Query 110736 GGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTT 110795 ||||| || | ||| | |||||||| || ||| | ||||||||||| | || || ||| Sbjct 3470 GGTGGAAAAAAAAAAAGGTCATTTGCAATTTATTTGGAACCTTGGCACGCGGACATTTTT 3411 Query 110796 GAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTT 110855 ||||| || || || || ||||| || || || ||| |||||||| | ||||| || Sbjct 3410 GAATTTTTGGAGCTGCGAAAAAACCATGGTGCAGAGGAAGAAAGAGCAAGAGATTTGTTC 3351 Query 110856 TATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCT 110915 || | ||||| || | || | |||||| ||||||| || |||||| ||| | Sbjct 3350 CTTGGATTGTGGGTTCCCGACCTGTTCATGGAACGTGTGAAAAGTGATGGCAAATGGAGT 3291 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 || |||||||| || | || || | ||| || | || || ||||||||||| Sbjct 3290 CTAATGTGTCCAAATGAGTGCAAAGGCCTGTTTGAGGTGTGGGGCAAGGAGTTTGAAGAG 3231 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT 111035 || ||| || || |||||| | ||||| |||||||| ||| | || | || || Sbjct 3230 CTGTACACAAGCTACGAAAAAAAGGGCAAATTTCGCAAGCAATTAAAGGCCCGTGAGCTC 3171 Query 111036 TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 ||| | || | | || ||| |||| ||||| |||||||| || | || |||| | Sbjct 3170 TGGAGCGCTATTTTGCAGTCGCAAATTGAGACTGGGACTCCTTACATGGTTTACAAAGGT 3111 Query 111096 CATATTAA 111103 ||| ||| Sbjct 3110 -ATAATAA 3104 >seq1807 Length=15346 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| || ||||||| || |||||||| |||||||| | |||||||||||||| || || Sbjct 7775 AAAAGGAGCATTTGCAATATATCTCGAGCCTTGGCACGCTGATATATTTGAATTTTTGGA 7834 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 || || | || || ||| ||||||| || || |||| ||||| |||| || |||| Sbjct 7835 TCTGCGCAGGAACCATGGAAGTGAAGAAGAACGAACACGCGATTTGTTTTTAGCGCTGTG 7894 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 | | ||||| | |||||||| || || || | ||| || ||| ||| |||||||| Sbjct 7895 GGTCCCAGATCTTTTCATGAATCGGGTGAAAAATGATGAAATTTGGAGTCTGATGTGTCC 7954 >seq46692 Length=2655 Score = 105 bits (116), Expect = 2e-17 Identities = 188/271 (69%), Gaps = 24/271 (9%) Strand=Plus/Plus Query 279192 ATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAA 279251 |||||||||| ||||||||||| |||| ||| || | |||| | | ||| ||| | || Sbjct 2322 ATAAATATGGAATATTTCCTTTACGAGGAAAATTATTAAATGTTAGAGATGAAAATA-AA 2380 Query 279252 CACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACAAATAT 279311 | ||||| ||||||| ||| ||| | ||||||||||||| ||| Sbjct 2381 C----------TTAAAATAAGTAAA----AATAAAGAAATATCTAATTTAAAACAATTAT 2426 Query 279312 TGGGATTA-GAGCA-AGGTAAAAAATAC------AAAGATACATCAAGT-TTACGATATG 279362 | |||||| ||| | | || || ||| ||| ||| | || ||| |||||| Sbjct 2427 TAGGATTAAGAGAAGATGTTAATTATAATGATTTAAATATATTTGAAACATTAAGATATG 2486 Query 279363 GTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATAC 279422 ||||| || || ||||||| ||||||| ||||||||||| || ||||||||||| Sbjct 2487 AAAAAATAATGATAATGACAGATCAAGATTATGATGGAAGTCATATAAAAGGATTAATTA 2546 Query 279423 TTAATTGGGTTGATACTTTCTGGCCAGAATT 279453 | |||| || ||| | ||||||||||| Sbjct 2547 TAAATTATTTTCATAATGGATGGCCAGAATT 2577 >seq21232 Length=11777 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||||||| | || || || |||||||||||||| |||||||| || || || |||||| Sbjct 10812 TGTTCAATCGACAGCCCTCGCTGCATAAAATGTCGATGATGGCACACAAGGTAAAAGTAC 10753 Query 305394 TATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 | || | | || || || || ||| | |||| || || || ||||| || |||| Sbjct 10752 TGCCTTGGTCCACCTTCCGCTTGAATCTCAGTGTCACCACTCCGTACAATGCCGACTTTG 10693 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | || ||||||||||| | || ||||||||| Sbjct 10692 ACGGTGATGAAATGAACTTACACGTACCTCAA 10661 >seq24876 Length=10336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| ||| |||||| | | || || | | |||| | | |||||||||| || Sbjct 6979 AAAATTTGAAATGAGCACATGAGATTTTCGTCCACACTCATCATAGCACCAGCATTGTCA 6920 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 ||||| | | || ||||||||||| |||||||| ||||||| || || ||| || Sbjct 6919 AATTC-TCCACAATAATTTGGTGCACTGAATACAGTCACTAATTGTCGCTTTGCAAAAAA 6861 Query 167321 TTCATAACCATCTTCAACAACTTCATGGGCACGTATTA-CAAGTTCAACTCCTAtttttt 167379 |||||| ||||| ||||| |||| ||| || || | ||||| ||| || | |||||| Sbjct 6860 TTCATATCCATCCTCAACCACTTGATGAGCTCGCGCAATCAAGTCCAAGTCATGTTTTTT 6801 Query 167380 tAAGAAAATTAGTTAAAGCACGTAATCCAAATTTATAA 167417 || ||| || | | | |||| |||||| ||||| Sbjct 6800 CAA-AAATTTGCTGACAACACGCGCACCAAATGTATAA 6764 >seq19760 Length=9634 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/189 (72%), Gaps = 9/189 (5%) Strand=Plus/Plus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 || |||| |||||||||| ||| || || || | |||| | | | ||||| ||||| Sbjct 7524 AAAATTTGAAAAGAGCACATAAGATTTTCATCCACGCTCATCATAGCTCCAGCGTTATCA 7583 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATT---TACGATTGAAAAA 167317 ||||| | |||| ||||||||||| || ||||| || |||| | || |||||| Sbjct 7584 AATTC-TCCGCAGTAATTTGGTGCGCTGAACACAGTCACCAATTGTCTTCG--CGAAAAA 7640 Query 167318 TAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTA-CAAGTTCAACTCCTAttt 167376 ||||| || |||||||||||||||| ||| || | | | ||| | ||| || | ||| Sbjct 7641 -AATTCGTATCCATCTTCAACAACTTGATGTGCTCTTGCAATCAAATCCAAATCGTGTTT 7699 Query 167377 ttttAAGAA 167385 ||| || || Sbjct 7700 TTTCAAAAA 7708 >seq9721 Length=5112 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAAC 167299 ||| |||| |||| |||||| |||||| |||||| ||||| ||||| | ||| || Sbjct 4171 CATAACACTACCACAATTATCAAATTCACCACAATAATTCGGTGCGGAAAAAATAGTTAC 4230 Query 167300 TAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | |||||| ||| || ||||| |||||||||||||||| ||||||||| Sbjct 4231 AAGTTTACGCCCAGCAAAGAACTCATAGCCATCTTCAACAACTTGATGGGCACG 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186040196364449