Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq49792 100 7e-16 seq11259 93.3 1e-13 seq45910 91.5 3e-13 seq35091 87.8 4e-12 seq36324 86.0 1e-11 seq19824 86.0 1e-11 seq48206 84.2 5e-11 >seq49792 Length=5355 Score = 100 bits (110), Expect = 7e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| ||||| || ||| ||||| || || Sbjct 557 AAAACTTTAACTGGGAAAACAATCACGTTGGATGTTGAACCCAACGACACGATCCAAAAC 616 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || || ||||| ||| || || ||| |||| ||||| Sbjct 617 GTGAAAGCCAAA-ATCCAGGACAAGGAAGGCATTCCTCCAGAGCAACAACGACTGATCTT 675 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||||||||| ||||||||||||||||| ||| |||||| ||| |||| ||||| Sbjct 676 TGCCGGAAAGCAATTGGAAGATGGAAGGACCTTGAGCGATTATAACATCCAAAAAGA 732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 206229 TGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||| ||| || || || ||| |||||| ||||| || ||||| ||| || || Sbjct 283 TGATACAATCCAAAACGTTAAGGCAAAGATCCAAGACAAGGAAGGCATTCCACCAGAGCA 342 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| || | ||||| || ||||| ||||||||||||||||| |||||| ||||||||| Sbjct 343 ACAACGATTAATCTTTGCTGGAAAACAGTTGGAAGATGGAAGAACTTTGAGCGATTACAA 402 Query 206349 CGTCCAGAAAGA 206360 | |||| || || Sbjct 403 CATCCAAAAGGA 414 >seq11259 Length=23860 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| |||||| | || |||||||| ||||| ||||| |||||| | ||||| || Sbjct 23860 TTTGTCAAAACTTTGACCGGAAAAACAATCACGTTGGATGTGGAACCTAACGACACCATC 23801 Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||||| ||| || || || || ||||| ||| || || ||| | | Sbjct 23800 CAAAATGTGAAAGCCAAA-ATCCAGGATAAGGAAGGTATTCCCCCTGAGCAACAACGTTT 23742 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||| |||||||| ||||||||||| | || ||| || |||||| |||| || Sbjct 23741 GATCTTCGCAGGAAAGCAATTGGAAGATGGCCGTACCTTGAGTGACTACAACATCCAAAA 23682 Query 206358 AGAGTCTACTCTTCACCTTGTTTTG 206382 ||| |||| | || | |||||| Sbjct 23681 AGAAAGTACTTTGCATTTGGTTTTG 23657 >seq45910 Length=1805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| ||||| || ||| |||||| || || Sbjct 135 AAAACCCTAACTGGGAAAACAATCACATTGGATGTTGAACCCAATGACACGATCCAAAAT 194 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| ||| || || ||| |||| ||||| Sbjct 195 GTGAAAGCCAA-GATCCAAGACAAGGAAGGCATTCCTCCAGAACAGCAACGACTAATCTT 253 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||| || || |||||||||||||| ||| ||||| ||| | || ||||| Sbjct 254 TGCTGGAAAACAATTAGAAGATGGAAGGACCTTGAGTGATTATAACATTCAAAAAGA 310 >seq35091 Length=3122 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| ||||| || || |||||| || || Sbjct 762 AAAACTCTAACTGGGAAAACAATCACATTGGACGTTGAGCCCAATGACACGATCCAAAAT 821 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || ||||| ||| || || ||| || | ||||| Sbjct 822 GTGAAAGCCAAA-ATCCAAGACAAGGAAGGCATTCCTCCAGAACAGCAACGATTAATCTT 880 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||||||| || || |||||||||||||| ||| || || ||| |||| ||||| Sbjct 881 TGCCGGAAAACAATTAGAAGATGGAAGGACCTTGAGTGACTATAACATCCAAAAAGA 937 >seq36324 Length=413 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||||||||| ||||| || ||| |||||| || || Sbjct 242 AAAACCCTAACTGGGAAAACGATCACATTGGACGTTGAACCCAATGACACGATCCAAAAT 301 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || ||||| ||| || || ||| || | ||||| Sbjct 302 GTGAAAGCCAAA-ATCCAAGACAATGAAGGCATTCCTCCAGAACAACAACGATTAATCTT 360 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 206354 ||||||| || || |||||||||||||| ||| || || ||| |||| Sbjct 361 TGCCGGAAGACAATTAGAAGATGGAAGGACCTTGAGTGACTATAACATCCA 411 >seq19824 Length=8713 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || |||||||| || || ||||| |||||| || ||| || Sbjct 7076 TTTGTCAAGACATTGACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7017 Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||||| ||| |||||||| || |||||||| || || ||| | | Sbjct 7016 CAAAACGTGAAAGCCAAA-ATTCAAGATAAGGAAGGAATCCCCCCTGAGCAACAACGTTT 6958 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||||||||| ||||| ||||| ||||| | |||||| |||||| ||| |||| || Sbjct 6957 GATCTTCGCCGGCAAGCAATTGGAGGATGGCCGCACTTTGAGCGATTATAACATCCAAAA 6898 Query 206358 AGA 206360 || Sbjct 6897 GGA 6895 >seq48206 Length=408 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||||||||| ||||| || ||| |||||| || || Sbjct 322 AAAACCCTAACTGGGAAAACGATCACATTGGACGTTGAACCCAATGACACGATCCAAAAT 263 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| ||| || || ||| || | ||||| Sbjct 262 GTGAAAGCCAAA-ATTCAAGACAAGGAAGGCATTCCTCCAGAACAACAACGATTGATCTT 204 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGG 206331 |||||||| || || |||||||||||| Sbjct 203 TGCCGGAAAACAATTAGAAGATGGAAGG 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181051446108089