Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq29189 109 5e-19 seq40549 107 2e-18 seq19824 102 8e-17 seq50756 96.9 3e-15 seq11259 96.9 3e-15 seq28421 86.0 6e-12 seq49792 84.2 2e-11 seq45780 84.2 2e-11 seq41098 84.2 2e-11 seq10537 84.2 2e-11 seq7650 84.2 2e-11 >seq29189 Length=1803 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || || |||||||||| | |||||||| ||||||||||| |||| ||| || Sbjct 535 AAACGTAAGACCAAATGTAAAGTACTTTCTTTTTGGATGTTGTAGTCACTCAAGGTGCGA 594 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 ||||||| | || || || | | |||| | || ||||| || ||||| |||||||| Sbjct 595 CAATCTTCTAATTGCTTGCCTGCAAAGATCAATCGTTGTTGTTCGGGAGGAATGCCTTCA 654 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| |||||| |||||| | || | || || | |||||||| || | ||| Sbjct 655 TTATCCTGAATTTTGGCTTTCAAATTTTGGATGGTGTCATTAGGCTCCACATCCAACGTG 714 Query 132086 AGCGTTTTACCAGTCAGAGTTTT 132108 | ||||| || |||| |||||| Sbjct 715 ATGGTTTTTCCGGTCAAAGTTTT 737 >seq40549 Length=748 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 |||||||| ||||| |||| | || |||||||||||||||||||||| || || Sbjct 346 AAGCGCAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGTAGTCGCTCAATGTGCGA 287 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 ||||| | || || || | | || | |||||||| || ||||| ||||||||| Sbjct 286 CCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGAATGCCTTCT 227 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| |||||| ||| | | || | ||||||| | ||||| || || | ||| Sbjct 226 TTATCCTGAATTTTGGCTTTAACATTTTGGATAGTATCGTTGGGCTCTACGTCCAACGTG 167 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAA 132114 | ||| ||||| |||| ||||| | ||| Sbjct 166 ATCGTCTTACCGGTCAAGGTTTTCACGAA 138 >seq19824 Length=8713 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| |||||||| | | ||||||||| ||||||||||| |||| || || Sbjct 6110 CAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCACTCAAAGTGCG 6169 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || | ||||| || | | | |||| ||| ||||| |||||||| || ||||| Sbjct 6170 GCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAGGAATTCCTTC 6229 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| |||||| ||| | | | | || ||| | || || || || | ||| Sbjct 6230 CTTATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTCGTTGGGTTCAACGTCCAACGT 6289 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||||| ||| || | ||| || ||||| Sbjct 6290 AATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || |||| |||||||||| | | || ||||||||||| || ||||||| || Sbjct 6570 CGTAAACGCAGCACCAAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCTCAAAGTG 6629 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| | ||||| || | | |||||| || ||||| || ||||| |||||| Sbjct 6630 CGACCGTCTTCTAATTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGGAATGCCT 6689 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| |||| | || | |||||| | || ||||| || | | Sbjct 6690 TCCTTGTCTTGGATTTTTGCCTTCACGTTTTGAATTGTATCGTTGGGTTCCACATCCAAC 6749 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAA 132114 || | ||||| || |||| |||||| | ||| Sbjct 6750 GTGATGGTTTTTCCGGTCAAAGTTTTCACGAA 6781 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| ||||| |||||||| | | | |||||||| |||||||||||||||| || Sbjct 6338 ACGCAAACGCAATACCAAATGCAAGGTACTTTCTTTTTGGATGTTGTAGTCGCTCAAAGT 6397 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | ||| || | ||||| |||| | |||| ||||| ||||| || || || || || Sbjct 6398 TCTTCCATCCTCTAATTGTTTGCCGGCAAAGATGAGACGTTGTTGCTCAGGCGGAATACC 6457 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| || | | || | || ||| | || ||||| || | Sbjct 6458 TTCCTTGTCCTGGATTTTCGCCTTGACATTTTGGATGGTGTCGTTGGGTTCCACGTCCAA 6517 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||||| || |||| ||||| | || || |||||| Sbjct 6518 CGTAATGGTTTTTCCGGTCAAGGTTTTAACAAAGATTTGCATG 6560 >seq50756 Length=522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || ||||| |||||||| | | | |||||||||||||| || ||||||| ||| Sbjct 182 CGTAAACGCAAGACCAAATGCAAGGTGCTTTCTTTTTGAATGTTATAATCGCTCAAAGTA 241 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || | ||||| |||| | | || | ||| || || || |||| |||||| Sbjct 242 CGACCGTCATCCAATTGTTTGCCGGCAAAAATCAAACGTTGCTGTTCATGAGGAATGCCT 301 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| |||||| ||| | | || | ||||||| | || ||||| || | | Sbjct 302 TCATTATCCTGAATTTTGGCTTTTACGTTTTGGATAGTATCGTTGGGTTCCACATCCAAC 361 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||||| ||||| | ||||| Sbjct 362 GTGATAGTTTTTCCAGTTAAGGTTTT 387 >seq11259 Length=23860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || |||||||||||||| | | |||||||| ||||||||||| |||| |||| Sbjct 23649 CGTAAACGCAAAACCAAATGCAAAGTACTTTCTTTTTGGATGTTGTAGTCACTCAAGGTA 23708 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || || || | |||| | ||| ||||| || || || || ||| Sbjct 23709 CGGCCATCTTCCAATTGCTTTCCTGCGAAGATCAAACGTTGTTGCTCAGGGGGAATACCT 23768 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| ||||| ||||| | || | || ||| | || ||||| || | | Sbjct 23769 TCCTTATCCTGGATTTTGGCTTTCACATTTTGGATGGTGTCGTTAGGTTCCACATCCAAC 23828 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||||| || |||| |||||| Sbjct 23829 GTGATTGTTTTTCCGGTCAAAGTTTT 23854 >seq28421 Length=944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 14/215 (7%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTA---TGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG 131959 || || |||| ||||| |||| || || |||||||||||||| || || |||| | Sbjct 295 CGTAAACGCAGCACCAAGTGTAGCGTGCTT---TCTTTTTGAATGTTATAATCACTCAAG 351 Query 131960 GTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATG 132019 | ||||| | ||||| |||| | | |||| || ||||| |||||||| ||| Sbjct 352 G--------TCTTCCAATTGTTTTCCGGCAAATATTAATCGTTGTTGCTCTGGAGGAATG 403 Query 132020 CCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 ||||| || || ||||| |||||| | || | ||||| | ||||| || || Sbjct 404 CCTTCCTTGTCTTGGATTTTGGCTTTCAAGTTTTGAATCGTATCATTGGGCTCAACATCC 463 Query 132080 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAA 132114 | ||| | ||||| || || | |||||| | ||| Sbjct 464 AACGTAATTGTTTTTCCGGTTAAAGTTTTCACGAA 498 >seq49792 Length=5355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTA---TGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG 131959 ||||| || || |||||||||| || || ||||||||||||||||||||||| | Sbjct 1056 CGCAAACGTAACACCAAATGTAACGTGCTT---TCTTTTTGAATGTTGTAGTCGCTTAAA 1000 Query 131960 GTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATG 132019 || || |||||| | ||||| || | | | || | || ||||| || ||||| || Sbjct 999 GTGCGGCCATCTTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGGGATT 940 Query 132020 CCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 ||||| || || |||||| || | | || | || ||| | ||||| || || Sbjct 939 CCTTCCTTGTCTTGAATTTTCGCCTTTACGTTTTGGATCGTGTCGTTGGGCTCGACATCT 880 Query 132080 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | || | ||||| || |||| ||| || | |||| Sbjct 879 AAGGTAATAGTTTTGCCGGTCAAAGTCTTCACGAAA 844 >seq45780 Length=809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || ||||| || ||||||| | || |||||||| ||||| ||||||| || || Sbjct 540 AAACGCAAGACTAAATGTAAAGTACTTTCCTTTTGAATATTGTAATCGCTCAATGTGCGA 599 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 ||||| | || || || | | || | |||||||| || ||||| ||||||||| Sbjct 600 CCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGAATGCCTTCT 659 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| |||||| || | | || | ||||||| | ||||| || || | ||| Sbjct 660 TTATCCTGAATTTTGGCCTTAACATTTTGGATAGTATCGTTAGGCTCTACGTCCAACGTT 719 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAA 132114 | ||| || || |||| ||||| | ||| Sbjct 720 ATCGTCTTGCCGGTCAAGGTTTTCACGAA 748 >seq41098 Length=1582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || ||||| |||||||| | | | |||||||||||||| || || |||| ||| Sbjct 446 CGTAAACGCAACACCAAATGCAAGGTGCTTTCTTTTTGAATGTTATAATCACTCAAAGTA 387 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || | ||||| || | | |||| | ||| ||||| || |||| |||||| Sbjct 386 CGGCCGTCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGCTCATGAGGAATGCCT 327 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| |||||| ||||| | || | || ||| | || ||||| || | | Sbjct 326 TCATTATCCTGAATTTTGGCTTTCACGTTTTGGATGGTGTCGTTGGGTTCCACATCCAAC 267 Query 132083 GTCAGCGTTTT 132093 || | | |||| Sbjct 266 GTGATCATTTT 256 >seq10537 Length=5798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 148146 CAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGC 148205 || ||||||||| ||| || ||| | ||||| | ||| | ||||| || Sbjct 5335 CAGAAAACACGACGACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGC 5276 Query 148206 GTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTC 148265 || |||||| ||||||||||||||| ||||| || || || | || | ||| || Sbjct 5275 ATGAGTAAACCATTTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTC 5216 Query 148266 GCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTT 148321 |||||| || || | || |||||||||||||||||||||| ||||||| || Sbjct 5215 CATGTGAATACCGAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTT 5160 >seq7650 Length=7814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| || ||||| ||||| ||||| ||||||||||||||| ||||| ||||| Sbjct 3910 GAATAGTGTGGGTGATGCGTGAATAAACCATTTTTGACTCATCAAATTGTACGTTTCAAT 3969 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 |||| | || | ||| || ||| || ||||||| || ||||| | ||||||||| || Sbjct 3970 AGCGGCATCCACGTCCTCCATGTGTATACCCAGCGACACACGCATTAACATGTGCTGCGG 4029 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAAC 148366 || || || | || | |||| || | | ||| | || | || || || || || Sbjct 4030 TCTCTCTGCTATTTTACCATTGACTTTCAACAAATA-CGATCTCTCCAGTGTCTTTACAC 4088 Query 148367 CAAAGTACTTGTAATCAAAATCT 148389 |||| || | ||| ||| ||||| Sbjct 4089 CAAAATAATCGTAGTCATAATCT 4111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476308498269240