Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq50756 127 2e-24 seq19824 105 6e-18 seq45780 102 7e-17 seq40549 102 7e-17 seq35091 100 3e-16 seq40838 93.3 4e-14 seq45910 91.5 1e-13 seq41098 91.5 1e-13 seq28421 89.7 5e-13 seq49792 87.8 2e-12 seq29645 87.8 2e-12 seq19397 87.8 2e-12 seq23482 84.2 2e-11 seq38859 82.4 7e-11 >seq50756 Length=522 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| ||||| ||||| |||||| | |||||| | || || ||| |||||||||||||| Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | |||||| |||||| ||||| || || || || | || |||||| | | Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| | |||||||||| | || || | | | | | | |||||||| || ||||||||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 25364 GAATCCACCATTCATTTAGTGTT 25386 ||| |||| | ||||| || || Sbjct 213 GAAAGCACCTTGCATTTGGTCTT 191 >seq19824 Length=8713 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || |||||||||||| | || ||| | || || ||| |||||||||| ||| Sbjct 7379 TTTGTGAAGACTTTAACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7320 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| |||||| ||||||||||| || || || || || ||| | || Sbjct 7319 CAAAACGTGAAAGCCAAAATTCAGGATAAAGAGGGAATTCCTCCAGAGCAACAACGTCTG 7260 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | || || ||| | ||||| | | | | | | ||||| || || || ||||| Sbjct 7259 ATCTTTGCAGGAAAGCAATTGGAAGACGGTCGCACTTTGAGCGACTATAACATCCAAAAG 7200 Query 25364 GAATCCACCATTCATTTAGTGTT 25386 ||| |||| | ||||| ||||| Sbjct 7199 GAAAGCACCTTGCATTTGGTGTT 7177 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || |||||| | || ||| | || || ||| ||||| Sbjct 6328 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACAATTACGTTGGACGTTGAACCCAAC 6269 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||| || | || ||| |||||| ||||| || || || || || || || Sbjct 6268 GACACCATCCAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGAGCAA 6209 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || |||||| | || |||| | | | | || || ||||| Sbjct 6208 CAACGTTTAATTTTTGCGGGAAAACAATTGGAGGATGGCCGCACTTTGAGTGACTACAAC 6149 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || |||||||| ||| | ||||| ||||| | |||||||||||||| Sbjct 6148 ATCCAAAAAGAGAGCACTTTGCATTTGGTGTTGCGTTTGAGAGGAGGAAA 6099 >seq45780 Length=809 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || ||||| || ||||| || |||| ||| | || || || | |||||||||||| Sbjct 748 TTCGTGAAAACCTTGACCGGCAAGACGATAACGTTGGACGTAGAGCCTAACGATACTATC 689 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || || |||||| |||||||| || || || || || || || || | Sbjct 688 CAAAATGTTAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCTGAGCAACAGCGATTG 629 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| || ||||| ||| | ||||| | | | | | |||||||||||||||||||| Sbjct 628 ATTTTCGCTGGCAAGCAATTGGAAGACGGTCGCACATTGAGCGATTACAATATTCAAAAG 569 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||| || | |||||||| || | || ||||| ||| Sbjct 568 GAAAGTACTTTACATTTAGTCTTGCGTTTAAGAGGTGGA 530 >seq40549 Length=748 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || ||||| || ||||| || |||||||| | || || || |||||||||||||| Sbjct 138 TTCGTGAAAACCTTGACCGGTAAGACGATCACGTTGGACGTAGAGCCCAACGATACTATC 197 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| |||||| |||||||| || || || || || || || || | Sbjct 198 CAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGCATTCCTCCTGAGCAACAGCGATTG 257 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| || ||||| ||| | ||||| | | | | | ||||| ||||| |||||||| Sbjct 258 ATTTTCGCTGGCAAGCAATTGGAAGACGGTCGCACATTGAGCGACTACAACATTCAAAAG 317 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||| || | || || ||||| | || ||||| ||| Sbjct 318 GAAAGTACTTTACACTTGGTGTTGCGCTTAAGAGGTGGA 356 >seq35091 Length=3122 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || ||||| ||| | || || | || || ||||||||||| || ||| Sbjct 1072 TTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGATC 1131 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| ||||||| ||||| || || || || || || || ||| | | Sbjct 1132 CAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTTG 1191 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| | || |||||| | ||||| | |||| | | ||||| ||||| ||||||||| Sbjct 1192 ATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAAA 1251 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||| | || || |||||| | ||| | || || Sbjct 1252 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 1289 >seq40838 Length=12235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || ||||| ||| | || || | || ||||| |||| || || ||| Sbjct 3965 TTTGTGAAGACTTTGACCGGCAAAACCATTACATTAGATGTCGAGCCCAATGACACAATC 3906 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || || ||||||| || || || || || || || || || ||| | | Sbjct 3905 CAAAACGTTAAGGCAAAAATTCAAGAAAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 3846 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | || || |||||| | ||||||| | | | | | ||||||||||| ||||||||| Sbjct 3845 ATCTTCGCAGGAAAACAATTGGAAGATGGTCGCACTTTAAGCGATTACAACATTCAAAAA 3786 Query 25364 GAATCCACCATTCATTTAGTGTTA 25387 ||| ||| | || ||||||||| Sbjct 3785 GAAAGCACGTTACACTTAGTGTTA 3762 >seq45910 Length=1805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || ||||| || ||| | || || | || ||||| |||| || || ||| Sbjct 451 TTCGTGAAGACTTTAACTGGTAAAACCATTACCTTAGATGTCGAGCCCAATGACACGATC 510 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || || |||||| ||||| || || ||||| || || || || | | Sbjct 511 CAAAATGTCAAGGCGAAAATTCAAGATAAGGAAGGAATACCCCCTGAACAACAGCGCTTG 570 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| | || |||||| | ||||||| |||| | | ||||| ||||||||||||||| Sbjct 571 ATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAATATTCAAAAA 630 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||| | || || |||||| | ||| | || || Sbjct 631 GAAAGCACGTTGCACTTGGTGTTACGTTTGCGTGGTGG 668 >seq41098 Length=1582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| |||| |||||| ||||| ||||||| | || || ||| ||||||| || ||| Sbjct 235 TTTGTGAAAATCTTAACCTGAAAAATGATCACGTTGGATGTGGAACCCAACGACACCATC 294 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| |||||| ||||| || || || || | || || ||| | | Sbjct 295 CAAAACGTGAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAGCAACAACGTTTG 354 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | ||||||||| | || || | | | | | || ||||| || ||||||||| Sbjct 355 ATCTTTGCTGGCAAACAATTGGAGGACGGCCGTACTTTGAGTGATTATAACATTCAAAAA 414 Query 25364 GAATCCACCATTCATTTAGTGTT 25386 ||| |||| | ||||| ||||| Sbjct 415 GAAAGCACCTTGCATTTGGTGTT 437 >seq28421 Length=944 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || ||||| ||| | || || | || ||||| |||| || || ||| Sbjct 209 TTTGTGAAGACTTTGACCGGCAAAACCATTACATTAGATGTCGAGCCCAATGACACAATC 150 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || || ||||||| || || || || || || || || || ||| | | Sbjct 149 CAAAACGTTAAGGCAAAAATTCAAGAAAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 90 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | || || |||||| | ||||||| | | | | | |||| |||||| ||||||||| Sbjct 89 ATCTTCGCAGGAAAACAATTGGAAGATGGTCGCACTTTAAGCGGTTACAACATTCAAAAA 30 Query 25364 GAATCCACCATTCATTTAGTGTTA 25387 ||| ||| | || ||||||||| Sbjct 29 GAAAGCACGTTACACTTAGTGTTA 6 >seq49792 Length=5355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || ||||| ||| | || || | || ||||| ||||||| || ||| Sbjct 845 TTCGTGAAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGACACGATC 904 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | ||||| |||||| || || || || || || || || || ||| | | Sbjct 905 CAAAACGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 964 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 |||| | || |||||| | ||||||| | | | | ||||| ||||| ||||||||| Sbjct 965 ATTTTTGCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACATTCAAAAA 1024 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||| | ||||| |||||| | ||| | || || Sbjct 1025 GAAAGCACGTTACATTTGGTGTTACGTTTGCGCGGTGG 1062 >seq29645 Length=800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || ||||||||||| ||||| || | |||||| | || || || ||||||||||||||| Sbjct 727 TTCGTAAAAACATTGACCGGCAAGACAATCACGTTGGATGTAGAGGCCAACGATACTATC 668 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | ||||| ||||||| ||||| || || || || || || || || || | Sbjct 667 CAAAACGTAAATGCAAAAATTCAGGATAATGAAGGAATTCCTCCAGAGCAACAGCGATTG 608 Query 25304 ATTTACGGCGGCAAACAACTCGAAGA 25329 |||| || ||||||||| | |||| Sbjct 607 ATTTTCGCTGGCAAACAATTGTAAGA 582 >seq19397 Length=4183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || || |||||| | || ||| | || || || ||||||| || ||| Sbjct 3900 TTCGTGAAGACTTTGACTGGAAAAACAATTACGTTGGATGTTGAGCCCAACGACACCATC 3959 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| |||||| || || || || || || || || || ||| | | Sbjct 3960 CAAAACGTCAAAGCGAAAATTCAGGACAAGGAAGGAATTCCCCCTGAGCAACAACGTTTG 4019 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | |||||| ||| | || || | ||| | | ||||||||||| || |||||| Sbjct 4020 ATCTTTGCCGGCAAGCAATTGGAGGACGGCCGAACTTTGAGCGATTACAACATCCAAAAA 4079 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||| | ||||| ||||| | ||| |||| || Sbjct 4080 GAAAGCACCTTGCATTTGGTGTTGCGTTTGCGAGGTGG 4117 >seq23482 Length=3631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || ||||||||||| || || | || || | || ||||| ||||||| || ||| Sbjct 639 TTCGTGAAAACATTAACGGGTAAGACAATTACCCTTGACGTCGAGCCCAACGACACAATC 698 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 | | || ||| |||||| || ||||| || || || || || || ||| | | Sbjct 699 CAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGAACAACAACGTTTG 758 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | |||||||||| | ||||||| |||| | |||||||| || || |||||| Sbjct 759 ATATTTGCCGGCAAACAATTAGAAGATGGAAGAACATTGAGCGATTATAACATCCAAAAA 818 Query 25364 G 25364 | Sbjct 819 G 819 >seq38859 Length=993 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || ||||| |||||||||||| | |||||| | || ||||| ||||||| || ||| Sbjct 307 TTCGTGAAAACCTTAACCGGAAAAACAATCACGTTGGATGTCGAGCCCAACGACACAATC 366 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || ||| ||||| || || || || || || || || |||||| || | Sbjct 367 CAGAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCAGAGCAGCAACGATTG 426 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAA 25363 || | | || || ||| | || |||| ||| | || || || || || |||||| Sbjct 427 ATCTTTGCTGGAAAGCAATTAGAGGATGGCCGAACCTTGAGTGACTATAACATCCAAAAA 486 Query 25364 GAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || | ||||| || || |||| |||| || Sbjct 487 GAAAGTACGTTGCATTTGGTATTGCGATTACGAGGCGG 524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444811714982880