Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7650 125 1e-23 seq12010 123 3e-23 seq1807 100 4e-16 >seq7650 Length=7814 Score = 125 bits (138), Expect = 1e-23 Identities = 204/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| || ||||| || || || ||| ||||||| ||||| | | ||| ||||| Sbjct 3821 TTCAGCGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAG 3880 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 || | ||| || | || || ||| |||| ||| || ||||||||| | |||||| Sbjct 3881 GATAGTTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCAT 3940 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCT 70092 |||| | | || |||||| ||||||||||| | || | ||| | || || || Sbjct 3941 TTTTGACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATGTGTATACCC 4000 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAAC 70152 | || |||||||| ||||| ||||| |||| ||| | ||||| ||| | ||||||| Sbjct 4001 AGCGACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAAC 4060 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 | || ||| | ||||| || || | |||||||| | ||| | | |||||| Sbjct 4061 AAATACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTAGTCATAATCTCTT 4114 >seq12010 Length=13650 Score = 123 bits (136), Expect = 3e-23 Identities = 470/727 (65%), Gaps = 12/727 (2%) Strand=Plus/Plus Query 39307 TTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTT 39366 |||||||||||| || |||| ||||| ||||| | | | || ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 39367 GCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttttttt 39426 |||| ||| ||||| ||||||| | ||||| ||||| | | ||| || |||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 39427 AAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 | ||||| | || || |||||| ||||||||||| |||||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG-ATGT 39545 | |||||||| || || || ||||| || || || | |||| ||| ||| || | Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCGCATTT 5567 Query 39546 CTACGGC--CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATG 39603 | || || |||| | | ||| || || | || || || ||| || | | Sbjct 5568 C-ACTGCATCTCTAACAATTTCG-TG-AACAATTTCGTCTTTCAACTGATTCACGCACTC 5624 Query 39604 TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 ||| | || ||||| ||| || | || || || | |||||||| ||| || Sbjct 5625 CCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATT 5684 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 ||| || || || ||||| | ||||||||| || ||||||||||| ||| ||| || Sbjct 5685 GCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGA 5744 Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT 39783 ||| || || || || ||||| ||| | ||||| | || | | || || Sbjct 5745 TCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAACCAATCGTTGAATGAAAGGTGC 5804 Query 39784 ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || |||| ||||||| | |||||| | || |||| || || || || || Sbjct 5805 TTCCTTATCCATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATCTCGTC 5864 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA- 39902 || || || || | | || ||||| | | || |||||||| ||||| |||| Sbjct 5865 CATCGCGTTGAACAAGTGCTGCTTTTCTTTGGCGTTCTTCACATATGTGTCTATCAACAA 5924 Query 39903 -GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 || ||| | ||| || | |||||| || || ||||| | ||||| || | | Sbjct 5925 CGAGTATGTCTCACTG--TGAACGTTTTCCATTGCAGCTTGAAACGCATAAAAGCAGCGT 5982 Query 39962 GCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 || |||| | || || || | || |||| ||| || |||||||| || || || Sbjct 5983 GCCTCAGGCAACTGCACGTCATTAATGAAAT-TTTTCGTTAAATTTTCCAATACAATGCC 6041 Query 40021 ATCACTA 40027 ||||||| Sbjct 6042 ATCACTA 6048 >seq1807 Length=15346 Score = 100 bits (110), Expect = 4e-16 Identities = 225/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 68879 TCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTAC 68938 |||||||||| ||||||| || || ||| | ||| |||| || |||| || Sbjct 8774 TCCAATCCCAGCGATCAGACGGCTTGACTCCCCATAAATCAAATTGCAGTTTTCCTTTCG 8715 Query 68939 TTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACA---AC 68995 |||| ||| |||||||| |||||||| || || || |||||||| | Sbjct 8714 ATGCAGGACTGCCAGGATATGTTTGGTAAGGTCCGTCAATTTTTGCGAGTTCACACGAAG 8655 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 69055 ||| | | ||||| | ||||| | || || || | ||| | | || || | Sbjct 8654 TTGTCACA---GCACCAAAGTAAATAGCCTCAAAGATATCACGATTTAATTTCTGAGCCT 8598 Query 69056 CTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAA 69115 || || || |||||| | | | | || ||| ||||||||| || ||||| |||| Sbjct 8597 CTGTGCTTTCAAATGGAAAGCGCAGCAATATGAATACATCTGCCAGACCTTGAACACCAA 8538 Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 | || ||||| | ||| || ||| ||| ||| || ||| || ||||||||||||| Sbjct 8537 TGCCAATAGGGCGATGCTTCAAATTCGAAGTTTTTGCCTCTTTCATTGGATAATAATTAA 8478 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTT 69212 | || |||||||| || | ||||||| ||||| ||| Sbjct 8477 TGTCAATAATTTTGTTCAAATTTCGGGTTACTATTTT 8441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686472535634760