Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12010 102 6e-17 seq22963 93.3 3e-14 >seq12010 Length=13650 Score = 102 bits (112), Expect = 6e-17 Identities = 246/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || || || || || ||||| || ||||||| ||||||| ||| || ||||| || Sbjct 6002 GACGTGCAGTTGCCTGAGGCACGCTGCTTTTATGCGTTTCAAGCTGCAATGGAAAACGTT 5943 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || | ||| | ||||||| || || | || | | | || ||||| Sbjct 5942 CACAGTGAGACATACTCGTTGTTGATAGACACATATGTGAAGAACGCCAAAGAAAAGCAG 5883 Query 44036 CGATTGTTTAATGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | ||||| || ||||| || | | | |||| | ||||| || ||| | ||||| | Sbjct 5882 CACTTGTTCAACGCGATGGACGAGATTGAATGCG-TGAAACAGAAGGCAAAATGGGCATT 5824 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| || | | |||| ||||| | || || | ||| ||| || Sbjct 5823 GCAGTGGATGGATAAGGAAGCACCTTTCATTCAACGATTGGTTGCTTATGCGTGTGTAGA 5764 Query 44155 AGGCATTTTCTTTTCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 || || || |||||| |||| ||| || ||||||||| ||||||| || |||||| Sbjct 5763 GGGAATATT--TTTCAGCGGATCATTTTGTGCAATATTTTGGCTAAAGAAGCGTGGTTTG 5706 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| || | |||||| ||||| |||| |||||||| ||||| || || ||| Sbjct 5705 ATGCCAGGCCTTACGTTTAGCAATGAACTAATTAGTCGTGACGAAGGATTGCACACTGAT 5646 Query 44273 TTTGCTTG 44280 || ||||| Sbjct 5645 TTCGCTTG 5638 >seq22963 Length=1357 Score = 93.3 bits (102), Expect = 3e-14 Identities = 249/373 (67%), Gaps = 16/373 (4%) Strand=Plus/Plus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || || ||||| || || ||| |||| ||||||| ||||||| | | || ||||| || Sbjct 48 GACGTGCAATTGCCTGATGCAAGATGCTTTTATGCGTTTCAAGCTTCAATGGAAAACGTT 107 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 || || | ||| | ||||| | || || | || | | | || ||||| Sbjct 108 CAAAGTGAGACATACTCGTTGTTGATAAACACATATTTGAAGAACGCCAAAGAAAAGCAG 167 Query 44036 CGATTGTTTAATGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | ||||| || ||||| || | | | |||| | ||||| || ||| | ||||| | Sbjct 168 CACTTGTTCAACGCGATGGACGAAATTGAATGCG-TGAAACAGAAGGCAAAATGGGCATT 226 Query 44095 TAAATGGATAAATTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 ||||||| ||| ||||| | ||| ||||| | || || | ||| || Sbjct 227 GCAATGGATGAAT---AATGAAGCACCTTTCATTCAACGATTGGTTGCTTATGCCTGTGC 283 Query 44152 GGAAGGCATTTTCTTTTCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 || || || || |||||| |||| ||| || ||||||||| ||||||| | || Sbjct 284 AGATGGAATATT--TTTCAGCTGATCATTTTGTGCAATATTTTGGCTAAAGAAGCATTGT 341 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG--CTTACATT 44267 ||||| || || | |||||| ||||| |||| |||||||| ||||| || ||| | Sbjct 342 TTGATTCCAGGCCTTACGTTTATCAATGAACTAATTAGTCGTGACGAAGGATCTCACACT 401 Query 44268 GCGATTTTGCTTG 44280 | |||||||||| Sbjct 402 G--ATTTTGCTTG 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397209881458045