Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1807 149 8e-31 seq7650 141 1e-28 seq146 104 3e-17 >seq1807 Length=15346 Score = 149 bits (164), Expect = 8e-31 Identities = 231/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||||| |||| ||| || |||||||| || |||||||||||||| | |||||| Sbjct 8589 TCAAATGGAAAGCGCAGCAATATGAATACATCTGCCAGACCTTGAACACCAATGCCAATA 8530 Query 111083 GGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 111140 || | || || ||| || ||| || | | || | |||||| |||| |||||| Sbjct 8529 GGGCGATGCTTCAAATTCGAAGTTTTTGC-CTCTTTC-ATTGGATAATAATTAATGTCAA 8472 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 111200 | | | ||| | |||| ||| || || || || | ||| | ||||||| |||||| Sbjct 8471 TAATTTTGTTCAAATTTCGGGTTACTATTTTCGTAACTTCTACTAATTTTTCA-AATCAA 8413 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 | || || ||| | |||||||| | || || | | ||| || |||||||| || |||| Sbjct 8412 ATGTTCGTGTCGCAACATTGACAAATTTGGGCAACGAGATAGAGGCCAAATTACATACAG 8353 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 | | ||||| | ||||||||| | ||||||||| ||||| || ||| ||||| | Sbjct 8352 CAATTTCATCTGGAGATGTGTACTCCACAATTTCTGTGCATAAATTTGAAGATTTAATTG 8293 Query 111321 TCCCCAAATTCTTTTGGTTACTCTT 111345 | |||||||||| ||| || || || Sbjct 8292 TTCCCAAATTCTGTTGATTGCTTTT 8268 >seq7650 Length=7814 Score = 141 bits (156), Expect = 1e-28 Identities = 327/487 (67%), Gaps = 12/487 (2%) Strand=Plus/Plus Query 110865 CTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCAT 110924 || ||||||||||||| || || |||||| ||| || ||||| || |||||| || | Sbjct 2531 CTCCCCACATGTCAAATTGGAGTTCCCCTTTGGAGGCAGGAGACCCAGCAAAGGATTTGT 2590 Query 110925 AGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA---TACATGG 110981 ||| || |||||||||||| || ||| || |||| | || |||| Sbjct 2591 AGGGCCCACACTTTTCAGCCAATTCGCACGAAGCCGACAC---TGCGCCAAAGTAAATGG 2647 Query 110982 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT--CTGAATCAAATGCGTAGCGGCA 111039 |||||| ||| ||||| | || || | ||| ||||||| ||||| Sbjct 2648 CTTCAAATATATCTCGATTCAGTTGGAGTGCCTCTTTGCTG--TCAAATGGATAGCGCAT 2705 Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 | |||||| |||||| || ||||| || || | ||||| || | |||| || || Sbjct 2706 GAGAATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTGGACGGTGTTTCACGTT 2765 Query 111100 AGAC-TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 || ||||| || | || || ||| |||| |||||| ||| ||| | || | Sbjct 2766 CGATGTTTCG-GCTTCTTTGACAGGGTAATAATTCACGTCAATCACTTTGTTCAAGTTCT 2824 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 111218 | || |||| || | |||||| |||||||| ||||||| || |||| | || Sbjct 2825 TTGTCACAACTTTGGCGATTTCGACAAGTTTTTTCAAATCAAAGTCTCGCGTCTTTGGAT 2884 Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 ||| |||| || | || || || ||||||||||| || ||| || ||| | || Sbjct 2885 CCACAAACTTGGGCAATGCAATCGACGCCAAATTGCACACTGCCACTTCGTCCGGAGATG 2944 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | |||||| || || || || || ||| || || |||||||||||||||| Sbjct 2945 TGTACTCCACAATTTCCGTGCACAAATTCGATGACTTTATTGTGCCCAAATTCTTTTGGT 3004 Query 111339 TACTCTT 111345 | ||||| Sbjct 3005 TGCTCTT 3011 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | || | | || ||| | || | ||||||||||||||||| Sbjct 2263 ACAAACTCGCCTGCCAAAGTGCGACGCACGTATACATTGCTCGTGTATGGTTCAAAGCAC 2322 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || ||||| ||||| ||||| ||| || |||||||||||||| |||| || | ||| Sbjct 2323 TCGTTATTTCCCAATATTTGACTGGTCGACGCTGTTGGCATTGGCGCCACTAATAAACTA 2382 Query 110798 TTACGAAGACC 110808 || || || || Sbjct 2383 TTTCGTAGTCC 2393 >seq146 Length=10098 Score = 104 bits (114), Expect = 3e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 || ||| || ||||| || | || || ||||| | ||||| |||| |||| || ||| Sbjct 8990 CAGAATGAACACATCGGCCAAGCCCTGCACACCAATGCCAATTGGTCGGTGTTTCAAATT 9049 Query 111100 AGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 ||| ||| | | ||| |||||||||| || |||||| ||| ||| | || | Sbjct 9050 GGACACCTCGGCCTCTTTCA-CGGGATAAAAGTTCACGTCAATCACTTTGTTCAAGTTCT 9108 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 111218 | || || | || || | ||| ||||| || | || || ||||| ||| | ||| Sbjct 9109 TTGTCACTACTTTGGTCACTTCGACCAGTTTCTCCAAGTCGAACTTGCGACTCTTTGCAT 9168 Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 ||| | || || || || || || ||||| ||||| || || || || | || Sbjct 9169 CCACAAATTTAGGCAGAGCAATCGACGCCAAGTTGCACACCGCGACTTCGTCTGGAGATG 9228 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | || || || || ||||| || ||| ||||| ||||| || ||||||| Sbjct 9229 TGTACTCCACTATCTCGGTGCACAAGTTCGATGACTTTATCGTACCCAAGTTTTTTTGGT 9288 Query 111339 TACTCTTCTTGTTGCA 111354 | ||||| | ||||| Sbjct 9289 TGCTCTTTCTATTGCA 9304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627633129026400