Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7650 107 2e-18 seq146 102 1e-16 >seq7650 Length=7814 Score = 107 bits (118), Expect = 2e-18 Identities = 204/298 (68%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 |||||| |||||| || ||||| || || | ||||||||| || ||| ||| || || Sbjct 2709 AATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTGGACGGTGTTTCACGTTCGA 2768 Query 118577 C-TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 118635 || || || | || || ||| ||||| || || || | || | || || | Sbjct 2769 TGTTTCG-GCTTCTTTGACAGGGTAATAATTCACGTCAATCACTTTGTTCAAGTTCTTTG 2827 Query 118636 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 118695 | ||||| || | |||||| ||| |||| ||||||| || |||| | || | Sbjct 2828 TCACAACTTTGGCGATTTCGACAAGTTTTTTCAAATCAAAGTCTCGCGTCTTTGGATCCA 2887 Query 118696 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 118755 || |||| || | || || ||||||| ||| ||||| | || ||| | |||| Sbjct 2888 CAAACTTGGGCAATGCAATCGACGCCAAATTGCACACTGCCACTTCGTCCGGAGATGTGT 2947 Query 118756 ACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||| | ||||||||||||||| || || ||| || |||||||| |||||||| || Sbjct 2948 ACTCCACAATTTCCGTGCACAAATTCGATGACTTTATTGTGCCCAAATTCTTTTGGTT 3005 >seq146 Length=10098 Score = 102 bits (112), Expect = 1e-16 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 118514 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 118573 || ||| || ||||| || | || || ||||| | ||||||||| || ||| ||| ||| Sbjct 8990 CAGAATGAACACATCGGCCAAGCCCTGCACACCAATGCCAATTGGTCGGTGTTTCAAATT 9049 Query 118574 AGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 ||| | ||| ||| |||||||||||| ||| || || || | || | || Sbjct 9050 GGACACCT---CGGCCTCTTTCACGGGATAAAAGTTCACGTCAATCACTTTGTTCAAGTT 9106 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 || || || || || || | ||| || || || | || || ||||| ||| | | Sbjct 9107 CTTTGTCACTACTTTGGTCACTTCGACCAGTTTCTCCAAGTCGAACTTGCGACTCTTTGC 9166 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 || ||| | ||||| || || || ||||||| || ||||| | | || || | Sbjct 9167 ATCCACAAATTTAGGCAGAGCAATCGACGCCAAGTTGCACACCGCGACTTCGTCTGGAGA 9226 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 |||||||| | || || ||||||||||| || ||| || || |||||||| ||||| Sbjct 9227 TGTGTACTCCACTATCTCGGTGCACAAGTTCGATGACTTTATCGTACCCAAGTTTTTTTG 9286 Query 118811 ATT 118813 || Sbjct 9287 GTT 9289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618042424074040