Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7650 111 2e-19 seq1807 107 2e-18 >seq7650 Length=7814 Score = 111 bits (122), Expect = 2e-19 Identities = 325/493 (66%), Gaps = 6/493 (1%) Strand=Plus/Minus Query 104951 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACA 105010 || || | |||||| || |||||||||||||| || ||| || ||| | || || Sbjct 3020 TGCAATCGAAAGAGCAACCAAAAGAATTTGGGCACAATAAAGTCATCGAATTTGTGCACG 2961 Query 105011 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCT 105070 ||||| |||| | ||| || || ||| ||||| || | || || || || Sbjct 2960 GAAATTGTGGAGTACACATCTCCGGACGAAGTGGCAGTGTGCAATTTGGCGTCGATTGCA 2901 Query 105071 CTCCCCAAGTATGTGGATCCAGAGACAA-AGACATTTGATTATGAAAAACTCCACGAAGT 105129 | ||||||| |||||||||| |||| |||| ||||||| ||||||| |||| | Sbjct 2900 TTGCCCAAGTTTGTGGATCCAAAGACGCGAGAC-TTTGATTTGAAAAAACTTGTCGAAAT 2842 Query 105130 TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGA 105189 | ||| ||| || || ||| | |||| ||| ||||| |||| |||||| || | Sbjct 2841 CGCCAAAGTTGTGACAAAGAACTTGAACAAAGTGATTGACGTGAATTATTACCCTGTCAA 2782 Query 105190 GACTGCTCGTAA-ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCG 105248 || || || ||| || ||| ||||||||||||||| | || || || || || | Sbjct 2781 AGAAGC-CGAAACATCGAACGTGAAACACCGTCCAATTGGCATTGGCGTGCAAGGACTGG 2723 Query 105249 CGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATG 105308 ||||| || ||||| ||| | ||||||| | | || || || | ||| Sbjct 2722 CGGATACGTTTATTCTCATGCGCTATCCATTTGACAGCAAAGAGGCACTCCAACTGAAT- 2664 Query 105309 CGCG-CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAG 105367 || | |||||||| |||| || | ||| | ||| | || ||||| || Sbjct 2663 CGAGATATATTTGAAGCCATTTACTTTGGCGCAGTGTCGGCTTCGTGCGAATTGGCTGAA 2604 Query 105368 GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTT 105427 ||| || || || |||||| || ||||| || || |||||| || |||||| Sbjct 2603 AAGTGTGGGCCCTACAAATCCTTTGCTGGGTCTCCTGCCTCCAAAGGGGAACTCCAATTT 2544 Query 105428 GATATGTGGGAAG 105440 || ||||||| || Sbjct 2543 GACATGTGGGGAG 2531 >seq1807 Length=15346 Score = 107 bits (118), Expect = 2e-18 Identities = 209/304 (69%), Gaps = 5/304 (2%) Strand=Plus/Plus Query 104960 AAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTG 105019 || || |||||| |||||||||| || || ||| ||| | || |||||||| || Sbjct 8268 AAAAGCAATCAACAGAATTTGGGAACAATTAAATCTTCAAATTTATGCACAGAAATTGTG 8327 Query 105020 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 105079 || | ||| |||||| | ||||| ||||| | || || ||| | | ||||| Sbjct 8328 GAGTACACATCTCCAGATGAAATTGCTGTATGTAATTTGGCCTCTATCTCGTTGCCCAAA 8387 Query 105080 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 105139 | ||| || | |||| |||||||||| ||||||| | ||||||||||||| Sbjct 8388 TTTGTCAATGTTGCGACACGAACATTTGATT-TGAAAAATTAGTAGAAGTTACGAAAATA 8446 Query 105140 GTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 105199 || ||| ||| | |||| | ||||||| | |||| ||| || | || | | | Sbjct 8447 GTAACCCGAAATTTGAACAAAATTATTGACATTAATTATTATCCAAT-GAAAGAGG-CAA 8504 Query 105200 AAA--TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTAT 105257 ||| || ||| ||| || || || ||||| | |||||||| ||||| || ||||||| Sbjct 8505 AAACTTCGAATTTGAAGCATCGCCCTATTGGCATTGGTGTTCAAGGTCTGGCAGATGTAT 8564 Query 105258 TCAT 105261 |||| Sbjct 8565 TCAT 8568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582890363775160