Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1806 179 2e-40 >seq1806 Length=4226 Score = 179 bits (198), Expect = 2e-40 Identities = 458/686 (67%), Gaps = 37/686 (5%) Strand=Plus/Minus Query 64882 AGTACTAAATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGG 64941 ||||||| | || | |||||||| | || ||||| | | ||||| || ||||| || Sbjct 3352 AGTACTATAACCATTACCAATACCTTGTGCACCATTAACAAGTATCATTGGTATAATAGG 3293 Query 64942 TGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATC 65001 |||||| ||| || || | ||||||||||| ||||| || | ||| | ||| Sbjct 3292 AATATAAAAATCAGGTTCTACTGGAAATCCATCATCATCTAAATAATTAAGAATAGAATC 3233 Query 65002 ATCCTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTC 65061 ||| | | ||| ||| | |||||||| | | | |||||||||||| | | Sbjct 3232 ATCATGTGAAATAAAAATATTTCTTGTTATTTTTGTAAGATTAGTATAAATATAACGT-- 3175 Query 65062 GGATGCGTGG--TCTTGTCCAGTTCGT---CGTGTTCCAAACTGACCATTTGGCATTAAT 65116 || || | | |||| ||| | | ||||||||||| || ||||| |||| Sbjct 3174 GGTTGACTAGAATCTTTACCACCTTTTAAACGTGTTCCAAAAAATCCTTTTGGTTGTAAT 3115 Query 65117 AAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAA 65176 ||||||||||| |||||||||| |||||| || || | || ||||| | | | |||| Sbjct 3114 AAATTAATATTATTTGAACCAACAAAATTTTGTGCTAAACCAATAATAGTTTGACATAAA 3055 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACT 65236 || ||||| || ||||||||| ||| | |||||| ||||| ||| ||||| ||||| Sbjct 3054 CTTGCTTCTCCATGATGATATGCTGTTTTTTCAGAAACATAACCAGATAATTGTGCAACA 2995 Query 65237 TTTATTTCCGTTGTTAAATTCTTT---TTAAATGCA-GAATACAATATTTTCCGTAAACT 65292 ||| || |||| | ||| | ||| ||| ||||| | ||||| | | Sbjct 2994 CGAATT----TTATTAATTAATTTACGTAAAAAGCATGAATAAATAATTTTTCTTTGTGA 2939 Query 65293 AATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATG 65352 | ||| |||||||| || | | |||||| ||||| | | ||| | | | | Sbjct 2938 AGGTTTAAATCCATCAATAATAGAAGGAATACTTCTTTTATTATCTTCAATAGCATATAA 2879 Query 65353 TATGAATTCTTTGTTAATAAATTCTTCATATGAAACACTCGTATTATCTGT---ATTCAA 65409 ||| |||||||| || | ||| |||| ||| |||| ||| ||| | ||| | Sbjct 2878 TATTAATTCTTTATTTACAAAATCTTGATAATAAAC------ATTTTCTTTAAAATTTAG 2825 Query 65410 ATAACTATCGCGATTATATTTTTCTAACCATTCTTTTCTATCACTTGAGC---GTTTTTA 65466 |||| || | | ||||| | ||||||||| |||||||||| ||| |||||| Sbjct 2824 ATAAGTACCAGAACGATATTCTGCTAACCATTGTTTTCTATCA--GCAGCTTTTTTTTTA 2767 Query 65467 TTAAAT-ATTAAATCAATGGTCTCATCACTTTCTTTGCCTGTATGTTCAAATCCA--ACA 65523 | |||| || ||| |||| | |||||| || | || ||| || |||| || ||| Sbjct 2766 TCAAATGCTTTAATTAATGAT-TCATCATCTTTAATATCTTTATATTTAAATTCAATACA 2708 Query 65524 ATTTTCTT----TTGTTTAAAATATT 65545 || || || ||||||||||| || Sbjct 2707 ATGTTGTTTTAATTGTTTAAAATGTT 2682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235534058768850