Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq146 87.8 2e-12 >seq146 Length=10098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 20384 TTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GC 20442 ||| | || || || ||||||||||| || ||| ||| || |||||||||| ||| || Sbjct 8613 TTGTTGGTTGCCCCAATGCCGACCGCTTCCACCAGCCAAATATTGGGGAACAATGAGTGC 8554 Query 20443 TTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGT--- 20499 ||| ||||| || || | |||| | ||| | ||||||||| |||| || ||||| || Sbjct 8553 TTT-GAGCCTTATACCAGCAACGTTTACATTCGTCGTACATTGGCAGGCGAGTTTGTGTG 8495 Query 20500 CATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGG 20548 ||| ||| || ||| |||| || |||||| ||| | | ||| ||| Sbjct 8494 CAT--TAATGAA-CACTTGGTACGAGACTTGATGAACTTGGGTATTTGG 8449 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 78505 ACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC- 78563 || |||||||| |||| || || || | ||| | |||| | || || ||||| ||||| Sbjct 8498 ACAAACTCGCCTGCCAATGTACGACGAATGTAAACGTTGCTGGTATAAGGCTC-AAAGCA 8556 Query 78564 CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGA 78623 ||| |||||||||| || ||| ||| || ||||||||||| || || |||| | | Sbjct 8557 CTCATTGTTCCCCAATATTTGGCTGGTGGAAGCGGTCGGCATTGGGGCAACCAACAAACT 8616 Query 78624 ATTCCGAAGACC 78635 ||||||||| || Sbjct 8617 ATTCCGAAGTCC 8628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548176425042960