Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12010 95.1 1e-14 seq7650 93.3 5e-14 >seq12010 Length=13650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| || | || || | |||||| ||||| |||||| ||||| | ||| Sbjct 5653 TGCAATCCTTCGTCACGACTAATTAGTTCATTGCTAAACGTAAGGCCTGGCATCAAACCA 5712 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||| | |||||| || ||||| || || || ||||| || || || || |||||| Sbjct 5713 CGCTTCTTTAGCCAAAATATTGCACAAAATGATCCGCTGAAAAATATTCCCTCTACACAC 5772 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC 74917 ||| | || || | ||||| ||| ||||| || Sbjct 5773 GCATAAGCAACCAATCGTTGAATGAAAGGTGCTTC 5807 >seq7650 Length=7814 Score = 93.3 bits (102), Expect = 5e-14 Identities = 282/430 (66%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 55499 GTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAG 55558 ||||||||||||||||| |||||||| ||| || |||| || |||||| || || Sbjct 2372 GTGGCGCCAATGCCAACAGCGTCGACCAGTCAAATATTGGGAAATAACGAGTGCTTTGAA 2313 Query 55559 CCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAAC 55618 || ||||||| ||| | ||| |||| || || | ||||| |||||||| |||||| Sbjct 2312 CCATACACGAGCAATGTATACGTGCGTCGCACTTTGGCAGGCGAGTTTGTGTGCATCAAC 2253 Query 55619 AAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATC-AAGACGGA 55677 | || | || || || ||| | || |||| || | || ||||| | Sbjct 2252 GAACATTTGGTGCGTGATCTAATGAACTTGGGCATTTGGACGCCTTTGCTCAAAGAC-AA 2194 Query 55678 TATTGTGCGGAACGGGGGGTCCGTCCAGAATCT---GGAGATTCC-TCTGCGTCTCAAGG 55733 ||| | ||| || || || || | || ||||| |||| ||| || | Sbjct 2193 AATTATTGCAAACAATGGCAGTGTTCAAAACTTAACTGAAATTCCTTCTG-ATCTAAAAG 2135 Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793 | || ||||||||||| ||| | || || | | ||||| ||| ||| |||| Sbjct 2134 CTTTGTATAAAACGGTGTGGGAAATTTCTCAAAAAACAATCATTGATATGGCTGCCGATC 2075 Query 55794 GTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGG 55853 | || |||| || || || || || || |||||||| |||| | | | | Sbjct 2074 GCGGAGCGTTTATTGATCAATCTCAATCGCTGAACATACACATGATGGGCGCCAATTTTG 2015 Query 55854 CCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACT 55913 || ||| || ||||||||||| || ||| | |||||||| || ||||| ||||| | Sbjct 2014 GTAAATTGTCGTCCATGCACTTTTATGGCTGGGAAAAGGGACTTAAAACGGGAATGTATT 1955 Query 55914 ATCTGCGGAC 55923 ||||||| || Sbjct 1954 ATCTGCGCAC 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546868456278200