Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq8768 109 2e-19 >seq8768 Length=1643 Score = 109 bits (120), Expect = 2e-19 Identities = 286/432 (66%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACC 5881 ||||| | ||| || || ||||| || || || || ||||| | ||||||| || | Sbjct 224 ACGACATCACCTTCGGCATTGGCCCGGCCGGTACCGGCAAGACTTACCTGGCCGTCGCCT 283 Query 5882 A--CGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 ||| |||| ||||| || | | | ||||| |||| | || || || Sbjct 284 GTGCGGTAGACGCCA--TGGAGCGCGACGCGGTGAAGCGCATCGTGCTGGTGCGCCCGGC 341 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 || || || | ||||||||| ||||||||||||||| ||| ||||| | | || Sbjct 342 GGTGGAAGCCGGTGAGAAGCTGGGCTTCCTGCCCGGCGACCTGGCGCAGAAGGTAGACCC 401 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGATGACGAAGC 6058 ||||| |||| || |||||| || ||||||| | ||| |||| | | | || Sbjct 402 GTACCTGCGCCCGCTGTACGACGCGCTGTACGACCTGATGGGCTTCGACAAGGTGGC-GC 460 Query 6059 GCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGT 6118 | || ||||| || | | ||| |||| ||||||||||| ||||| ||||| ||| Sbjct 461 GGCTGTTCGAGAAAAACCTGATCGAGATCGCGCCGCTGGCCTATATGCGGGGCCGCACGC 520 Query 6119 TCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACCCCGCGCCAGACCGCGC 6178 | ||| || | | |||| || || || ||| ||| |||| ||| |||| | Sbjct 521 TGAACAACGCCTTCATCATCCTCGATGAAGCGCAAAACACCACGCCGGAGCAGATGAAGA 580 Query 6179 TGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGT 6238 || | | |||||| | |||||||| || |||||| | | ||| ||| ||||| Sbjct 581 TGTTCCTCACCCGCATCGGCTTCGGCTCGCGCGCCGTCATTACCGGCGACGTAACCCAGA 640 Query 6239 GCGACCTGCCGC 6250 ||||||| ||| Sbjct 641 TCGACCTGGCGC 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191372464398720