Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq7882 95.1 4e-15 seq6776 89.7 2e-13 >seq7882 Length=1276 Score = 95.1 bits (104), Expect = 4e-15 Identities = 221/331 (67%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 ||| |||||||| |||| || ||||| ||||| | || ||| ||||||| | || Sbjct 837 GGCAGCCATGTAGGCGGCGCAGTGGTGCGCTTTCAGCCAGGCGGTGTGGTAGGCCACCAG 778 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 | |||| || || | ||||| |||||||||| |||| |||||||| | | ||| Sbjct 777 CGCGTAAGCGGCCGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAACTTCTCCATGTAGTC 718 Query 39142 CCACACCGCCTGGATGGCGCTGTCCGAGTAG----CCTCGCTCGCGCGCTCCCTTCTGGA 39197 | | | | |||| || || || | | | || || ||| || ||| || Sbjct 717 GAAGATTTCGT---TGGCCTTGGCCTCGTCGATGCCGTTGCCGGC-CGCGCCTTTCACGA 662 Query 39198 AGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCA 39257 | | || || | ||| ||||| |||||| || ||||| || || ||||||| Sbjct 661 ACATGGCGCGCTGCGCCACCATTTCCTCGACCTTCTTTTTACCCATCGCGCGGCGCAGCA 602 Query 39258 GGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCT 39317 |||||| ||||||||||||||| | | |||||| |||| | |||||| |||| Sbjct 601 AGTCGGCGCCGCCCAGGCTGTAGCCGCCACACACCTGCGCGGCCTGCATCACCTGTTCCT 542 Query 39318 GGTAGATGATGAGCCCGTACGTCGGGTCCAG 39348 |||| | || | ||||| || ||| |||| Sbjct 541 GGTACACCATAATGCCGTAGGTAGGGGCCAG 511 >seq6776 Length=1165 Score = 89.7 bits (98), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 40124 CCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCAT--CGAAGTCGA 40181 || || |||| | ||| || ||| ||||||||||| ||||| ||| |||||||| Sbjct 246 CCATATTTCTGGCGGACATAGTCGATCACCTCGCCGCGGCGCCG--CATGCAGAAGTCGA 303 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 | || | ||||||| ||| ||||| ||||| || || || || ||||||| || ||| Sbjct 304 TATCGAAGTCGGGCGGGGAAACGCGTTCGGGATTGAGAAAGCGTTCGAAGAGCAGACCGA 363 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 | ||||||| | |||||| ||||| |||| || |||| | ||||| | | Sbjct 364 AGCGGATGGGATCGATATTGGTGATGCCGAGCAAGTAAGCCACCATGCAGCCGGCACCGG 423 Query 40302 AGCCTCGCCCAGGACCGACC 40321 |||| || || || || ||| Sbjct 424 AGCCACGACCCGGGCCAACC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160309617695766