Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq19824 100 2e-16 seq45910 84.2 2e-11 seq45884 84.2 2e-11 seq19397 84.2 2e-11 >seq19824 Length=8713 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 || || || |||||||| | || || |||||||| || || || ||| | |||| | Sbjct 6342 AAACGCAATACCAAATGCAAGGTACTTTCTTTTTGGATGTTGTAGTCGCTCAAAGTTCTT 6401 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 | || || | |||||||| ||||| || ||||| || || || | || | | || Sbjct 6402 CCATCCTCTAATTGTTTGCCGGCAAAGATGAGACGTTGTTGCTCAGGCGGAATACCTTCC 6461 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||||| ||||||| |||| | | || ||| | | |||||||||| ||| Sbjct 6462 TTGTCCTGGATTTTCGCCTTGACATTTTGGATGGTGTCGTTGGGTTCCACGTCCAACGTA 6521 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||| |||| |||||||||||||||||||| Sbjct 6522 ATGGTTTTTCCGGTCAAGGTTTTAACAAAGATTTGCAT 6559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || ||||||||||| | |||||||||||||| || || || || Sbjct 6102 CCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCACTC 6161 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || | || || | ||||| |||||||| || | ||| || || || | || Sbjct 6162 AAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAGGA 6221 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || || || ||||| ||||| || | || ||| | | || ||| Sbjct 6222 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTCGTTGGGTTCAACG 6281 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||| || ||||||| |||| || ||||| ||||||||||| Sbjct 6282 TCCAACGTAATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 >seq45910 Length=1805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC-GGC 39116 || |||| ||| || |||||||| ||||||||||| |||||||| || |||||||| | Sbjct 346 CCACCTCGTAAACGCAACACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATCACTC 287 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || | | | || || | ||||| || ||||| || || || ||||| || | || Sbjct 286 AAG-GTCCTTCCATCTTCTAATTGTTTTCCAGCAAAGATTAGTCGTTGCTGTTCTGGAGG 228 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || ||||| ||| || ||| | | | ||| || | | || || Sbjct 227 AATGCCTTCCTTGTCTTGGATCTTGGCTTTCACATTTTGGATCGTGTCATTGGGTTCAAC 168 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 |||| ||||| |||| || || || ||||| |||||| Sbjct 167 ATCCAATGTGATTGTTTTCCCAGTTAGGGTTTTCACAAAG 128 >seq45884 Length=997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||||| |||||| || ||||| || || ||||| | || || ||| ||| Sbjct 922 ACCAAATGTAACGTGCTTTCCTTTTGGATGTTGTAATCACTCAAAGTGCGACTGTCTTCA 863 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | || || |||||||| || ||||| ||||| || | || | | |||||||| | Sbjct 862 AATTGCTTTCCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCTTCTTTGTCTTGG 803 Query 39196 ATTTTCTGTTTGAGCGTC---GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||||| ||| | | || ||| | | ||||| |||| ||| || || Sbjct 802 ATCTTTGCTTTGA-CGTTTTTGATAGTGTCTCGTTGGGTTCCACATCCAACGTAATGGTT 744 Query 39253 TTTCCCGTCAGCGTTTTAACAAAG 39276 |||||||||| ||||| |||||| Sbjct 743 TTTCCCGTCAAAGTTTTCACAAAG 720 >seq19397 Length=4183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || || ||||||||||| | ||||| |||||||| || || |||||| Sbjct 4117 CCACCTCGCAAACGCAACACCAAATGCAAGGTGCTTTCTTTTTGGATGTTGTAATCGCTC 4058 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||||| |||| || | || ||||| ||||| || | ||| || || || | ||| Sbjct 4057 AAAGTTCGGCCGTCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGTTGCTCAGGGGGA 3998 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| |||||| ||||| | | || ||| | | ||| || Sbjct 3997 ATTCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTTTGGATGGTGTCGTTGGGCTCAACA 3938 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 |||| ||| || ||||||| |||| || || || ||| Sbjct 3937 TCCAACGTAATTGTTTTTCCAGTCAAAGTCTTCACGAAG 3899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429279610464617