Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq45910 89.7 4e-13 seq19166 86.0 5e-12 seq35091 82.4 6e-11 >seq45910 Length=1805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101011 GCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGC 101070 ||| || ||||| | |||||||| |||||| || |||||||||||||||||| ||| Sbjct 669 GCCACCACGCAAACGTAACACCAAGTGCAACGTGCTTTCTTTTTGAATATTGTAGTCGCT 610 Query 101071 CATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGG 101130 | |||| | ||||||||||||||| |||||| | || | | ||||| || ||| Sbjct 609 TAAAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATCAAGCGCTGTTGTTCAGGGGG 550 Query 101131 CACGCCTTCTTTGTCGGCAATTTT 101154 | ||||| || || |||||| Sbjct 549 TATTCCTTCCTTATCTTGAATTTT 526 >seq19166 Length=5045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 101011 GCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGC 101070 ||| || ||||| | |||||||| ||| || || |||||||||||| ||||| ||| Sbjct 4750 GCCACCACGCAAACGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 4809 Query 101071 CATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGG 101130 | |||| | ||||||||||||||| || ||| | || || | |||||| || ||| Sbjct 4810 TAAAGTTCTTCCATCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGTTGTTCAGGGGG 4869 Query 101131 CACGCCTTCTTTGTC 101145 | ||||| ||||| Sbjct 4870 GATTCCTTCCTTGTC 4884 >seq35091 Length=3122 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101011 GCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGC 101070 ||| || ||||| | |||||||| ||| || || |||||||||||| ||||| ||| Sbjct 1290 GCCACCACGCAAACGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 1231 Query 101071 CATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGG 101130 | |||| | |||||||||||||| || ||| | || | | |||||| || ||| Sbjct 1230 TAAAGTTCTTCCGTCTTCCAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGGGG 1171 Query 101131 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT 101190 | ||||| || || ||||||| ||| |||| | ||| || ||| Sbjct 1170 GATTCCTTCCTTATCTTGAATTTTTGCTTTGACATTTTGGATCGTGTCGTTGGCTTCAAC 1111 Query 101191 TTCGACGGTAATAGTTTTGCCCGTCAATGTTTT 101223 || | |||||| |||||||| ||||| || || Sbjct 1110 ATCTAAGGTAATGGTTTTGCCGGTCAAAGTCTT 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409407123822531