Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq16931 84.2 7e-12 >seq16931 Length=1075 Score = 84.2 bits (92), Expect = 7e-12 Identities = 173/253 (68%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 34053 CTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCG 34112 ||| || || || |||||||| | ||| ||||||||||||||||| | || || ||||| Sbjct 533 CTCCTCACGATAGACGAACATCACCACATCGGCGTCCTGCTCGATGGTGCCCGAGTCGCG 592 Query 34113 CAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 || ||||| | ||| || |||| | ||||| ||| | ||| ||||||| || Sbjct 593 GAGATCCGAAAGGCGCGGCCGTTTGTCCTCCCGCTTCTCGACATCGCGACTGAGCTGGGA 652 Query 34173 CAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGGACATGTC 34232 ||| | | || || | | | ||||| | |||| |||| ||| || || Sbjct 653 AAGCGCCAGGACCGGCACATCCAGCTCTTTCGCCAACGCCTTGAGGCCCCGGCTCACCTC 712 Query 34233 GCTGACGTCCTCGGTGCGAGTTGA--CTTGCCGGAGCTCTC-CAGCAACTGCAGGTAGTC 34289 ||| || |||| | || || | ||||| || ||| || ||| | |||||| ||||| Sbjct 713 GCTCACTTCCT--GCACGCGTCCATCCTTGCGGGTGCTTTCGCAG-AGCTGCAGATAGTC 769 Query 34290 CACCACCAGCAGG 34302 ||||| |||||| Sbjct 770 GACCACGAGCAGG 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160367182942410