Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7650 109 8e-19 seq1807 100 4e-16 seq10537 98.7 1e-15 >seq7650 Length=7814 Score = 109 bits (120), Expect = 8e-19 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||| ||||| || || || || || ||||| ||||| | | ||| ||||| Sbjct 3821 TTCAGCGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAG 3880 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || | ||| || || || || ||| |||| ||| || ||||| || |||||||| Sbjct 3881 GATAGTTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCAT 3940 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCC 78499 |||| | | | |||||| ||||||||||| | || | |||| | || || || || Sbjct 3941 TTTTGACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACC 3999 Query 78500 TACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAA 78559 | || |||||||| ||||| ||||| ||||| || | | ||| ||| | |||||| Sbjct 4000 CAGCGACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAA 4059 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| || ||| | |||| || || | ||||||||| | ||| Sbjct 4060 CAAATACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 >seq1807 Length=15346 Score = 100 bits (110), Expect = 4e-16 Identities = 211/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 77826 CCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGAT 77885 ||||||||||| || || | || |||| | |||| | ||| || || ||| | | Sbjct 8098 CCGGTTTCAATTTGGGAGTGAATGATAGCTGTCCACAGTTGTCTTGCCTTAATC-TGCTT 8040 Query 77886 TTG-TATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC 77944 | |||||| || |||||||| | ||| | | |||||| || || ||||| || Sbjct 8039 GCGATATCGCTGCTTACTTTCATAAAAACAATACAACTTTTCAAACTCTTCGCCCCAGAC 7980 Query 77945 ATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAAC 78004 |||| |||||| ||| || || || ||||||| ||| |||| | || || Sbjct 7979 ATCAAACAATCCTTTGCACTCGTTCGGACACATCAGACTCCAAATTTCATCATTTTTCAC 7920 Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064 || ||||| || ||||| || | ||| || || | ||| | ||| || |||| | ||| Sbjct 7919 CCGATTCATGAAAAGATCTGGGACCCACAGCGCTAAAAACAAATCGCGTGTTCGTTCTTC 7860 Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 |||| |||| ||| | ||||| | ||| || | ||||||| ||||| || || Sbjct 7859 TTCACTTCCATGGTTCCTGCGCAGATCCAAAAATTCAAATATATCAGCGTGCCAAGGCTC 7800 Query 78125 TAGATATATTGC 78136 ||||||||||| Sbjct 7799 GAGATATATTGC 7788 Score = 100 bits (110), Expect = 4e-16 Identities = 335/518 (65%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 77287 TCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTAC 77346 |||||||||| |||| || || || |||| | ||| |||| || |||| || Sbjct 8774 TCCAATCCCAGCGATCAGACGGCTTGACTCCCCATAAATCAAATTGCAGTTTTCCTTTCG 8715 Query 77347 TAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 ||| ||| |||||||| |||||||| || ||| || |||||||| | Sbjct 8714 ATGCAGGACTGCCAGGATATGTTTGGTAAGGTCCGTCAATTTTTGCGAGTTCACACGAAG 8655 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 | || || || | ||||| | || || || | ||| | | || || || Sbjct 8654 TTGTCACAGCACCAAAGTAAATAGCCTCAAAGATATCACGATTTAATTTCTGAGCCTCTG 8595 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 | || ||||| ||| | | | | || || ||||||| | || ||||| ||||| | Sbjct 8594 TGCTTTCAAATGGAAAGCGCAGCAATATGAATACATCTGCCAGACCTTGAACACCAATGC 8535 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 ||||||| | ||| || ||| ||| |||| || ||| || |||||||||||||||| Sbjct 8534 CAATAGGGCGATGCTTCAAATTCGAAGTTTTTGCCTCTTTCATTGGATAATAATTAATGT 8475 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | |||||||| || | ||||| |||| ||| || || || ||| |||| Sbjct 8474 CAATAATTTTGTTCAAATTTCGGGTTACTATTTTCGTAACTTCTACTAATTT-TTCAAAT 8416 Query 77647 CAAATCTTC------CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700 ||||| ||| || | | ||||| || ||| | ||||| || | |||||| | Sbjct 8415 CAAATGTTCGTGTCGCAACATTGACAAATTTGGGCAACGAGATAGAGGCCAAATTACATA 8356 Query 77701 CTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 | || | |||| | | | | | || | | || || || |||| ||| | |||| Sbjct 8355 CAGCAATTTCATCTGGAGAT-GTGTACTCCACAATTTCTGTGCATAAATTTGAAGATTTA 8297 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 || || |||| ||| ||||| ||||| || |||||| Sbjct 8296 ATTGTTCCCAAATTCTGTTGATTGCTTTTGCGATTGCA 8259 >seq10537 Length=5798 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || |||||||| || || ||||| || ||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 |||| || || || |||||| | || || || || || || ||||| ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCC 78499 |||| | | |||||||| ||||| || || | || | |||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 78500 TACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAA 78559 | | || ||||| | ||| ||||| ||||| || | | | ||||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 |||||| ||| || | ||||||| ||| || |||| || |||||| Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTC 5093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694227607161760