Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12010 93.3 6e-14 seq1807 91.5 2e-13 >seq12010 Length=13650 Score = 93.3 bits (102), Expect = 6e-14 Identities = 289/444 (65%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 46320 TTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTT 46379 |||||||||||| || |||| ||||| || || | | | || ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 46380 GCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAttttttt 46439 |||| ||| ||||| ||||||| | ||||| ||||| | ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 46440 AAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTC 46499 | ||||| | || ||||||||| ||||| ||||| || || ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 46500 ACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 | |||||||| || || ||||| || || || || | |||| || || | Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCGCATTT 5567 Query 46560 GACAGCA--TCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGT 46617 || ||| || | | | ||| || || |||| || | ||| || | | Sbjct 5568 CACTGCATCTCTAACAATTTCG-TG-AACAATTTCGTCTTTCAACTGATTCACGCACTCC 5625 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 ||| | ||| || |||||| || | ||||| || | |||||||| ||| || Sbjct 5626 CGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATTG 5685 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||| || || || ||||| | |||||||| || ||||||||||| || || ||| Sbjct 5686 CTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGAT 5745 Query 46738 CCAGAAAAGAATATGCCTTCTACA 46761 || || ||||| || |||||| Sbjct 5746 CCGCTGAAAAATATTCCCTCTACA 5769 >seq1807 Length=15346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 76484 TATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543 ||||||| || |||||||| ||| ||| |||||| || || ||||| |||||| Sbjct 8035 TATCGCTGCTTACTTTCATAAAAACAATACAACTTTTCAAACTCTTCGCCCCAGACATCA 7976 Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603 ||| || || || ||||||||||||| ||| |||| | || ||||| Sbjct 7975 AACAATCCTTTGCACTCGTTCGGACACATCAGACTCCAAATTTCATCATTTTTCACCCGA 7916 Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| || ||||| || | ||| || || | ||| | ||| || |||| ||||||| Sbjct 7915 TTCATGAAAAGATCTGGGACCCACAGCGCTAAAAACAAATCGCGTGTTCGTTCTTCTTCA 7856 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 |||| ||| | ||||| | || || | ||||||| ||||| || || ||| Sbjct 7855 CTTCCATGGTTCCTGCGCAGATCCAAAAATTCAAATATATCAGCGTGCCAAGGCTCGAGA 7796 Query 76724 TATATCGC 76731 ||||| || Sbjct 7795 TATATTGC 7788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712481606450880