Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq8787 96.9 1e-15 >seq8787 Length=1853 Score = 96.9 bits (106), Expect = 1e-15 Identities = 182/264 (69%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 31006 CATGCACATGTGTCGCGCCTTAATGACCACACCGACGCC-CTTGGCTTCCAGGTGCTCGA 31064 ||||||| ||| ||||| ||||| || ||||||| | |||| | || ||| Sbjct 690 CATGCACTGGTGCGCCGCCTCGATGACAACGGCGACGCCGCGCGGCTGC-AGCACCTCCT 748 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 ||| | || |||||||| | || ||| ||||| | |||||||| | | | Sbjct 749 GCAGCGTGTTGGCGATCTGCGCCGTCAGCTTCTCCTGGATCTGCAGGCGATGGCCGAAGG 808 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 || ||| ||||| |||||||| | ||| || | ||| || ||| | ||| | || Sbjct 809 CATCGACCACGCGGGCGAGCTTGCTGATGCCGACCACACGCTTGTCCGGCAGGTACC-GA 867 Query 31185 TCGTGACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGT 31244 |||| |||||| ||||||| | | ||||||||||||||| || | || | |||||| Sbjct 868 CATGGACCCTGCCGATGATCGGCACCATGTGATGCTCGCAATGAGATTCGAGGCGGATGT 927 Query 31245 CGCGCACCGTCACCATCTGGTCAT 31268 |||||| || ||| | || ||||| Sbjct 928 CGCGCAGCGCCACGACCTCGTCAT 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187176597532224