Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq6776 104 7e-18 >seq6776 Length=1165 Score = 104 bits (114), Expect = 7e-18 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGA 40173 || || |||| | ||| || |||||| ||||| || ||||| ||| |||||||| Sbjct 246 CCATATTTCTGGCGGACATAGTCGATCACCTCGCCGCGGCGCCG--CATGCAGAAGTCGA 303 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 | || | ||||||| ||| ||||| ||||| || || || || ||||||| || ||| Sbjct 304 TATCGAAGTCGGGCGGGGAAACGCGTTCGGGATTGAGAAAGCGTTCGAAGAGCAGACCGA 363 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 ||||||| || | | ||||||||||| |||| || |||| | |||||| | | Sbjct 364 AGCGGATGGGATCGATATTGGTGATGCCGAGCAAGTAAGCCACCATGCAGCCGGCACCGG 423 Query 40294 AGCCACGTCCGGGTCCGACC 40313 ||||||| || || || ||| Sbjct 424 AGCCACGACCCGGGCCAACC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160044177947352