Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq35091 102 2e-16 seq40838 98.7 2e-15 seq19166 95.1 3e-14 seq28421 93.3 1e-13 seq45910 86.0 1e-11 >seq35091 Length=3122 Score = 102 bits (112), Expect = 2e-16 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 |||||||| |||||||| ||| ||||||||| || ||||| | ||| || || || Sbjct 1253 TCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCGTCTTCCAATTGTTTTCCTGCAAAA 1194 Query 151974 AT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || |||| | || || || | | |||||||||||| |||||||||||| ||||||| | Sbjct 1193 ATCAAGCGT-TGTTGTTCAGGGGGGATTCCTTCCTTATCTTGAATTTTTGCTTTGACATT 1135 Query 152033 CTCTACGCTGTC-TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCA 152091 | | |||| | || || || || | ||||| |||||||| || | |||||||| Sbjct 1134 TTGGATCGTGTCGTTGGCT-TCAACATCTAAGGTAATGGTTTTGCCGGTCAAAGTCTTCA 1076 Query 152092 CGAA 152095 |||| Sbjct 1075 CGAA 1072 >seq40838 Length=12235 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 |||||||| |||||||||||| |||||| | |||||||| | ||| || |||||| Sbjct 3784 TCTTTTTGAATGTTGTAATCGCTTAAAGTGCGACCATCTTCCAATTGTTTTCCTGCGAAG 3843 Query 151974 AT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || |||| | || || || | | ||||||||||||||||||||||||| || || | Sbjct 3844 ATCAAGCGT-TGTTGTTCAGGAGGGATTCCTTCCTTTTCTTGAATTTTTGCCTTAACGTT 3902 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 | | |||| ||| || || | ||||| |||||||| || | ||||||||| Sbjct 3903 TTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTTGCCGGTCAAAGTCTTCAC 3962 Query 152093 GAA 152095 || Sbjct 3963 AAA 3965 >seq19166 Length=5045 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 |||||||| |||||||| ||| ||||||||| |||||||| | ||| || || || Sbjct 4787 TCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCATCTTCCAATTGTTTTCCTGCAAAA 4846 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || || | || || || | | |||||||||||| ||||| ||||| |||||| | Sbjct 4847 ATCAGGCGTTGTTGTTCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTGACATTT 4906 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 | | |||| ||| || || | ||||| |||||||| || | |||||||||| Sbjct 4907 TGGATCGTGTCATTCGGCTCGACATCCAAGGTAATGGTTTTGCCTGTCAAAGTCTTCACG 4966 Query 152094 AA 152095 || Sbjct 4967 AA 4968 >seq28421 Length=944 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 |||||||| ||||||||| || |||||| | |||||||| | ||| || |||||| Sbjct 28 TCTTTTTGAATGTTGTAACCGCTTAAAGTGCGACCATCTTCCAATTGTTTTCCTGCGAAG 87 Query 151974 AT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || |||| | || || || | | ||||||||||||||||||||||||| || || | Sbjct 88 ATCAAGCGT-TGTTGTTCAGGAGGGATTCCTTCCTTTTCTTGAATTTTTGCCTTAACGTT 146 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 | | |||| ||| || || | ||||| |||||||| || | ||||||||| Sbjct 147 TTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTTGCCGGTCAAAGTCTTCAC 206 Query 152093 GAA 152095 || Sbjct 207 AAA 209 >seq45910 Length=1805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 |||||||| || ||||| ||| ||||||||| |||||||| | ||| || || || Sbjct 632 TCTTTTTGAATATTGTAGTCGCTTAAAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAA 573 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || | | ||| || || | | ||||||||||| ||||||||||| |||||| | Sbjct 572 ATCAAGCGCTGTTGTTCAGGGGGTATTCCTTCCTTATCTTGAATTTTCGCCTTGACATTT 513 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 | | |||| ||| || || | ||||| ||||| || || | |||||||||| Sbjct 512 TGGATCGTGTCATTGGGCTCGACATCTAAGGTAATGGTTTTACCAGTTAAAGTCTTCACG 453 Query 152094 AA 152095 || Sbjct 452 AA 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153069673836839