Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq19824 116 3e-21 seq50756 100 2e-16 seq35091 95.1 1e-14 seq49792 89.7 4e-13 seq21059 87.8 2e-12 seq19166 86.0 5e-12 seq45780 82.4 6e-11 >seq19824 Length=8713 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| |||||||| ||||||||||| |||| |||||||| | Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | || || ||||| ||||| ||||| |||| || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | ||| ||||||||||| || ||| | |||| || ||| || || Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||| ||| | ||||| || |||||| |||| ||||| Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATTGCGTTTGCGTGGTGG 6333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 ||||| || || || ||||| ||||||||||| |||| |||||||| |||| | | Sbjct 7379 TTTGTGAAGACTTTAACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7320 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | || ||| |||||| || ||||| || |||| || |||||| | || Sbjct 7319 CAAAACGTGAAAGCCAAAATTCAGGATAAAGAGGGAATTCCTCCAGAGCAACAACGTCTG 7260 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 || | ||| || || ||||||||||| | ||| || ||| ||||| || ||||| Sbjct 7259 ATCTTTGCAGGAAAGCAATTGGAAGACGGTCGCACTTTGAGCGACTATAACATCCAAAAG 7200 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || | ||||| ||||||||| | || ||||| Sbjct 7199 GAAAGCACCTTGCATTTGGTGTTGCGTTTACGTGGTGG 7162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 |||||||| || |||||||| ||||||||||| |||| |||||||| |||| | | Sbjct 7076 TTTGTCAAGACATTGACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7017 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | || ||| |||||| || || ||||| | ||| || |||||| | | Sbjct 7016 CAAAACGTGAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCTGAGCAACAACGTTTG 6957 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 || | || ||||| |||||||| ||| ||| || ||||||||| || ||||| Sbjct 6956 ATCTTCGCCGGCAAGCAATTGGAGGATGGCCGCACTTTGAGCGATTATAACATCCAAAAG 6897 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || | ||||| ||| |||| | || ||||| Sbjct 6896 GAAAGCACTTTGCATTTGGTGCTGCGATTACGTGGTGG 6859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/239 (68%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || ||||| || ||||| ||||| |||| ||||||| | Sbjct 6328 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACAATTACGTTGGACGTTGAACCCAAC 6269 Query 111160 GATTCTGTTGGCCAG---GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || | | |||| || ||| |||||| || || ||||| |||| || Sbjct 6268 GACACCAT---CCAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGAG 6212 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | |||| |||||| ||||||||||| ||| ||| || || || Sbjct 6211 CAACAACGTTTAATTTTTGCGGGAAAACAATTGGAGGATGGCCGCACTTTGAGTGACTAC 6152 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAAT 111334 || || |||||||| || | ||||| ||||||||| || | || || || ||||| Sbjct 6151 AACATCCAAAAAGAGAGCACTTTGCATTTGGTGTTGCGTTTGAGAGGAGGAAACTAAAT 6093 >seq50756 Length=522 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 ||||| ||||| || || || ||||| || || |||| |||||||| |||| || | Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | |||||| |||||| || || |||||| |||| || || ||| | | Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 |||| ||| |||||||||||||| || | ||| || ||||||||| || |||||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || | ||||| || |||||| | || ||||| Sbjct 213 GAAAGCACCTTGCATTTGGTCTTGCGTTTACGAGGTGG 176 >seq35091 Length=3122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111108 TTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGT 111167 ||| || || || ||||||||||||||||||||| | || ||| ||| ||| | | Sbjct 1071 TTTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGAT 1130 Query 111168 TGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCT 111227 | || ||| ||||||| || || ||||| | ||| || |||||| | | Sbjct 1131 CCAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTT 1190 Query 111228 TATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAA 111287 |||| ||| || |||||||||||||| | |||| | ||| || || || ||||| Sbjct 1191 GATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAA 1250 Query 111288 AGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 |||| || |||| || ||||| ||| |||| |||||| Sbjct 1251 AGAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGGC 1290 >seq49792 Length=5355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 ||||| || || ||||| ||||||||||| ||| | || || |||| ||| | | Sbjct 233 TTTGTGAAGACATTGACGGGCAAAACCATAACCTTAGACGTTGAGCCCAATGATACAATC 292 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | || || ||| || ||||| |||||| |||| || |||||| | | Sbjct 293 CAAAACGTTAAGGCAAAGATCCAAGACAAGGAAGGCATTCCACCAGAGCAACAACGATTA 352 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 || | ||| || ||||| ||||||||| | |||| || |||||| || || ||||| Sbjct 353 ATCTTTGCTGGAAAACAGTTGGAAGATGGAAGAACTTTGAGCGATTACAACATCCAAAAG 412 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||| || | |||||||| |||||| | ||||||||| Sbjct 413 GAAAGCACGTTGCATTTAGTATTGCGTTTACGCGGTGGC 451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111108 TTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGT 111167 ||| || || || |||||||||||||| |||||| | || || |||| ||| | | Sbjct 844 TTTCGTGAAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGACACGAT 903 Query 111168 TGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCT 111227 | ||||| |||||| ||||| ||||| | || || |||||| | | Sbjct 904 CCAAAACGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACAACGCTT 963 Query 111228 TATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAA 111287 |||| ||| || |||||||| |||||| ||| | ||| || || || ||||| Sbjct 964 GATTTTTGCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACATTCAAAA 1023 Query 111288 AGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 |||| || ||||||| ||||| ||| ||||||||||| Sbjct 1024 AGAAAGCACGTTACATTTGGTGTTACGTTTGCGCGGTGGC 1063 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 || || ||||| || || || ||||| || || |||| ||||||| ||| | | Sbjct 551 TTCGTGAAAACTTTAACTGGGAAAACAATCACGTTGGATGTTGAACCCAACGACACGATC 610 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | || ||| ||||| ||||| |||||| |||| || |||||| | || Sbjct 611 CAAAACGTGAAAGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGAGCAACAACGACTG 670 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 || | ||| || || |||||||||||| | || || ||||||||| || |||||| Sbjct 671 ATCTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCTTGAGCGATTATAACATCCAAAAA 730 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||| | ||||| || |||||| | || ||||| Sbjct 731 GAAAGCACATTGCATTTGGTATTGCGTTTACGAGGTGG 768 >seq21059 Length=25508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 || |||||| | | || | ||| ||||| |||||||||||| | ||| || |||| Sbjct 22895 GAACAACAACGATTAATATTTGCTGGCAAGCAATTGGAAGATGGAAGGACTTTGAGCGAT 22836 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||||||| ||||| ||||||||||||||| |||| ||||| Sbjct 22835 TACAACATTCAAAAAGAAAGCACACTGCATTTAGTGTTGCGTTTGCGTGGTGG 22783 >seq19166 Length=5045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 111108 TTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGT 111167 ||| || || || ||||| ||||||||||||||| |||| || || | || | | Sbjct 4969 TTTCGTGAAGACTTTGACAGGCAAAACCATTACCTTGGATGTCGAGCCGAATGACACGAT 4910 Query 111168 TGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCT 111227 | || || ||||| ||||| ||||| | ||| || |||||| | || Sbjct 4909 CCAAAATGTCAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGAACAACAACGCCT 4850 Query 111228 TATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAA 111287 |||| ||| || ||||||||||||||| | |||| | ||| || || || ||||| Sbjct 4849 GATTTTTGCAGGAAAACAATTGGAAGATGGAAGAACTTTAAGCGACTACAACATTCAAAA 4790 Query 111288 AGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 |||| || |||| || ||||| ||| |||| |||||| Sbjct 4789 AGAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGGC 4750 >seq45780 Length=809 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111109 TTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111168 || || ||||| ||||||||||| || || || |||| || || | |||| || | Sbjct 748 TTCGTGAAAACCTTGACCGGCAAGACGATAACGTTGGACGTAGAGCCTAACGATACTATC 689 Query 111169 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111228 | || || |||||| || ||||||||| |||| || ||||| | | Sbjct 688 CAAAATGTTAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCTGAGCAACAGCGATTG 629 Query 111229 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111288 |||| || ||||| ||||||||||| | || || |||||| ||||| ||||| Sbjct 628 ATTTTCGCTGGCAAGCAATTGGAAGACGGTCGCACATTGAGCGATTACAATATTCAAAAG 569 Query 111289 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||| |||||||||| |||||| | | ||||| Sbjct 568 GAAAGTACTTTACATTTAGTCTTGCGTTTAAGAGGTGG 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421549999873384