Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq48569 102 8e-17 seq19397 100 3e-16 seq35091 95.1 1e-14 seq19824 95.1 1e-14 seq32733 91.5 1e-13 seq49792 86.0 6e-12 >seq48569 Length=404 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||| ||||||| ||||| ||||| ||||| || |||||||| ||| Sbjct 299 CCACCTCGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAATCGATC 240 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||| | || || | ||||||||||| || || | |||||||| || | ||| Sbjct 239 AGGGTGCAGCCATCCTCCAATTGCTTGCCGGCAAAGATTAATCGCTGTTGCTCAGGAGGA 180 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | | ||| ||| || |||| |||| ||| | |||||| | | |||||| Sbjct 179 ATACCTTACTTATCC-TGGATTTTGGCTTTCACGTTTTGGATAGTGTCATTGGGCTCCAC 121 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 |||| ||| || ||||| || |||| || || |||||| Sbjct 120 ATCCAACGTGATGGTTTTTCCAGTCAAAGTTTTCACGAAA 81 >seq19397 Length=4183 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| ||||||| ||||| ||||| || || || ||||| || ||| Sbjct 4117 CCACCTCGCAAACGCAACACCAAATGCAAGGTGCTTTCTTTTTGGATGTTGTAATCGCTC 4058 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | ||||||||||| || |||| || ||||| || | |||| Sbjct 4057 AAAGTTCGGCCGTCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGTTGCTCAGGGGGA 3998 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| |||| ||| | |||||| | | ||| || Sbjct 3997 ATTCCTTCCTTGTCC-TGAATTTTCGCTTTGACGTTTTGGATGGTGTCGTTGGGCTCAAC 3939 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| ||| || ||||| || |||| ||||| ||||| Sbjct 3938 ATCCAACGTAATTGTTTTTCCAGTCAAAGTCTTCACGAA 3900 >seq35091 Length=3122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| |||| || || |||| ||||| || || ||||| || ||||||||||| Sbjct 307 CCGCCTCGTAATCGCAATACCAAATGCAATGTACTTTCCTTTTGGATGTTATAGTCACTT 248 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || |||| || | || || ||||| || |||| || || || || | || Sbjct 247 AAGGTTCGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGGG 188 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| |||| |||| ||| | | |||||| | | ||| || Sbjct 187 ATGCCTTCCTTGT-CTTGAATTTTGGCTTTCACGTTCTGGATCGTGTCGTTAGGCTCGAC 129 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| |||||| ||||| || |||| || |||||||| Sbjct 128 GTCCAACGTTATTGTTTTTCCGGTCAAGGTTTTTACGAA 90 >seq19824 Length=8713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||| ||||||| ||||| ||||| ||||| || |||||||||||| Sbjct 7162 CCACCACGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAGTCGCTC 7221 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || | ||||| || || || ||||| || ||||| || | ||| Sbjct 7222 AAAGTGCGACCGTCTTCCAATTGCTTTCCTGCAAAGATCAGACGTTGTTGCTCTGGAGGA 7281 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| ||| |||| |||| ||| | || ||| | | ||||| Sbjct 7282 ATTCCCTCTTTATCC-TGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCAC 7340 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| ||| || ||||| || || | ||||| || || Sbjct 7341 ATCCAACGTAATGGTTTTTCCGGTTAAAGTCTTCACAAA 7379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||| | ||||| ||| | ||||| ||||| ||||||||||| ||| Sbjct 6564 CCACCTCGTAAACGCAGCACCAAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCTC 6623 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| || | || || || || || || | || ||||| || | ||| Sbjct 6624 AAAGTGCGACCGTCTTCTAATTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGGA 6683 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG--ACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||||||| |||| ||| || | || ||| | | |||| Sbjct 6684 ATGCCTTCCTTGTCTTGGATTTTTGCCTTC-ACGTTTTGA-ATTGTATCGTTGGGTTCCA 6741 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||| ||| || ||||| || |||| || || ||||| Sbjct 6742 CATCCAACGTGATGGTTTTTCCGGTCAAAGTTTTCACGAA 6781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| || | ||||| ||||| ||||| ||||| || |||||||| ||| Sbjct 6859 CCACCACGTAATCGCAGCACCAAATGCAAAGTGCTTTCCTTTTGGATGTTATAATCGCTC 6918 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||||||||||| |||| || ||||| || | ||| Sbjct 6919 AAAGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGTTGCTCAGGGGGG 6978 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| | | ||| |||| |||| ||| | || ||| | | ||||| Sbjct 6979 ATTCCTTCCTTAT-CTTGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCAC 7037 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| ||| || ||||| || |||| ||||| || || Sbjct 7038 ATCCAACGTAATGGTTTTTCCGGTCAATGTCTTGACAAA 7076 >seq32733 Length=1362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 |||| ||| ||||| | |||| ||||| | ||| ||||||||||| ||| | || Sbjct 265 CGTAAACGCAACACTAAGTGCAAGGTGCTTTTCTTTTGAATGTTATAATCGCTCAAAGTT 206 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 || |||| || | ||||||| ||| || |||| | ||||| || | ||||| | Sbjct 205 CGGCCGTCTTCCAATTGCTTGCAGGCAAAGATCAAATGTTGTTGCTCTGGGGGAATTCCT 146 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCAC 41820 || |||||| ||| ||||||||| ||| | ||||| | | |||||| |||| Sbjct 145 TCATTGTCC-TGAATTTTTGCTTTGACGTTTTGGATGGTGTCATTGGGCTCCACATCCAA 87 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 ||| || ||||| ||||||| || || || ||| Sbjct 86 CGTGATGGTTTTTCCCGTCAAAGTTTTCACAAAA 53 >seq49792 Length=5355 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | ||||||||||| ||| | |||||| || || |||||||| |||||| Sbjct 1063 GCCACCGCGCAAACGTAACACCAAATGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCT 1004 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | || || || || || |||| ||| ||||| || | || Sbjct 1003 TAAAGTGCGGCCATCTTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGG 944 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 | | ||||||| | ||| |||| || | ||| | |||||| | | ||| | Sbjct 943 GATTCCTTCCTTGT-CTTGAATTTTCGCCTTTACGTTTTGGATCGTGTCGTTGGGCTCGA 885 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | || | || || ||||| || |||| ||||| |||||| Sbjct 884 CATCTAAGGTAATAGTTTTGCCGGTCAAAGTCTTCACGAAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462010384950800