Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq429 250 3e-61 >seq429 Length=23534 Score = 250 bits (276), Expect = 3e-61 Identities = 434/629 (69%), Gaps = 18/629 (3%) Strand=Plus/Minus Query 145540 ACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCC 145599 || ||||||| ||| | || || || |||||| ||||||||| | | | |||||||| Sbjct 6720 ACGGCCATCTTCATCTGAATCGCGCCGAGGGGGTTGTAGCCCTCGATCTCGAAGTCCTCG 6661 Query 145600 GCCCTGAAGTCATCTATGTCCT------CCACCCGCCTCAGGATCCTGAGCCTGGGAAAG 145653 | | |||||| || || |||| || | ||| | |||| ||||| |||| ||| Sbjct 6660 GAGCGGAAGTCGTCGATCTCCTTGATGTCCTCGCGCGGCGAGATCTTGAGCGTGGGGAAG 6601 Query 145654 GGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713 | || || | | |||||| ||| ||| |||||||||| ||| |||||| Sbjct 6600 GCGCGCGGCACGCGGCGCAGCTGCTCGGCCAGCGGCCCCACGTGGTTCGAGTACACGTGC 6541 Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773 ||||| || | | ||| | | ||| || ||| | ||||| | | || | |||| Sbjct 6540 GCGTCGCCGATGCAGTGCACCAGGTCGCCAGGCCGCAAATTCGTGACGCGAGCCAGCATG 6481 Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833 | |||||||| | |||| || |||||||||||||| ||||||||||| || | | Sbjct 6480 CACGTCAGCAGCGCGTAGGACGCGATGTTGAAGGGCACGCCCAGCCCCATATCGGCGCTG 6421 Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGG 145893 |||||||| ||| |||| |||||||| ||| ||| ||||||||||| | || | |||| Sbjct 6420 CGCTGGTAGAGCAGGCACGAGAGCTCGCCGTCCGAGACGTAGAACTGCGAGAGCACGTGG 6361 Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG---TGAGGACGAGC 145950 || || ||||| ||||| | |||||||||||||||||| || | ||| || | || Sbjct 6360 CACGGTGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCCGACATGATGATGCGC 6301 Query 145951 CTCCTGCTCTCGGGGTTC---CTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACG 146007 | | | ||||||||| | | | | | | | ||| |||||||||||| Sbjct 6300 CGCGAG---TCGGGGTTCTGGCGCAGGGT---GCGCACAACGTCGGCCAGCTGGTCCACG 6247 Query 146008 CCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGG 146067 |||| ||| ||| || | | | |||| | ||| | || |||||||||| ||||||| Sbjct 6246 CCCTTGCCCGTGTAGTCGGCGTGGCAGTCGATGTAAGGCGCACCGAAGTGCCGCCACTGG 6187 Query 146068 AACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGG 146127 || ||||| || || ||||||||| | | | | | | | | || | | | ||| Sbjct 6186 AAGCCGTATACAGGACCCAGGTCCTGCGCCGCGCGGCCGCTCTGGCCAATCGAGTCCAGG 6127 Query 146128 AAGTCCCGGGACCCGTTGGCGTCCCAGAT 146156 || || ||||| |||||| |||||||||| Sbjct 6126 AACTCGCGGGAGCCGTTGCCGTCCCAGAT 6098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071533564560