Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq53 150 2e-31 seq168 113 5e-20 seq182 107 2e-18 >seq53 Length=108086 Score = 150 bits (166), Expect = 2e-31 Identities = 229/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG 116929 ||||||||| | ||| | || | || ||| ||| |||||||| ||| | | | Sbjct 12660 ATGGAGAACATCCACGCCGAGACCTACTCGCTCCTGATCGACACCTACATCACCGACCAG 12719 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 | |||||| |||| | || |||||||||||||| |||| | ||| ||||| Sbjct 12720 GTCGAGAAGACCCGTCTCTTTAACGCCATCGAGACCGTGCCTTCGGTCCGCACCAAGGCG 12779 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | ||||| || |||||| | | || | |||| ||||||||| || | | Sbjct 12780 GCCTGGGCCCTCAAGTGGATCAACAACCCCACTGCGTCGTTCGCCGAGCGCCTCGTCGGC 12839 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| |||||||||| ||||||| || ||| ||| |||||| || ||||||||| Sbjct 12840 TTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAG 12899 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || |||||| |||||||| || || ||| ||||||||||||||| | |||||||| Sbjct 12900 AAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGC 12959 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCT 117195 || || |||||| ||||| |||| Sbjct 12960 CTCCACACCGACTTCGCCTGCCTGCT 12985 Score = 129 bits (142), Expect = 6e-25 Identities = 195/276 (71%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| |||| || || || |||||||| || || | || ||| |||||| Sbjct 12212 GACAACCCCGGCCGCTTTGTCATGTTCCCCATCCAGCACAAGACGATTTGGGAGATGTAC 12271 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||| ||||||| |||||||| | ||||||| | ||||| | ||| | | Sbjct 12272 AAGAAGCATAAGGCGTCTTTCTGGACTGCCGAGGAGATCGACCTCAGCGCCGACCCCAAG 12331 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| || | || | || | || ||| | ||||||||| ||||||| ||||| Sbjct 12332 GACTGGAAGACCCTCTCGGCCGGCGACCAGCAC---TTCATCAAGAACGTGCTCGCCTTC 12388 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||||||| ||||||||| || ||||| || | | || ||| ||||||| Sbjct 12389 TTCGCCGCCTCCGACGGCATTGTGCTTGAGAACCTCGCTGTCCGCTTCATGAAGGAGGTC 12448 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 ||| | ||||||| || |||||||||||||| ||| Sbjct 12449 CAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 12484 >seq168 Length=58069 Score = 113 bits (124), Expect = 5e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||| | ||| ||||||||| |||| ||||| | || Sbjct 177 ATGCAGATCTTCGTGAAGACGCTCGCCAACAAGACCATCACCCTCGATGTCGACCACTCC 118 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || | ||| | || || | ||||| |||||||||||| |||||||| Sbjct 117 GACACGATCGAGACCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 58 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||||||| | |||||| ||||| || || | ||||||||| |||||| Sbjct 57 CAGCGTCTCATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACCCTCGCGGACTAC 1 >seq182 Length=55624 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||| || ||| |||||||| | || ||||| | | Sbjct 55448 ATGCAGATTTTCGTGAAGACCCTCGCGAACAAGACCATCACTCTTGATGTCGACCACTCG 55507 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | || ||||| | || || | ||||| |||||||||||| |||||||| Sbjct 55508 GACACCATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 55567 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||||||| | |||||| ||||| || || | ||||||||| |||||| Sbjct 55568 CAGCGTCTCATCTTCCAGGGCAAGCAGCTCGATGATGGCCGCACCCTCGCGGACTAC 55624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214601668640