Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq168 86.0 4e-12 >seq3 Length=187283 Score = 100 bits (110), Expect = 2e-16 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||||| | || || ||||| | || |||||||| | ||||||||||| Sbjct 12532 TCCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGC 12473 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| ||||||| | ||||||||| ||| ||||| ||||||||||| ||| Sbjct 12472 AAGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGG 12413 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GTCG--AT-- 34336 | || ||||||||| ||||| ||||| | ||| | ||| |||| |||| || Sbjct 12412 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGA---CGG-TCTCG-ATCGTGTCGGAATGG 12358 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||||| || | ||| || || ||| | ||| || || || || |||||||||| Sbjct 12357 TCGACATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCATCG 12303 >seq168 Length=58069 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || || | ||||||||| ||| ||||| ||||||||||| ||| | || | Sbjct 17 CGGCCATCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCC 76 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTA-GATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347 |||||||| ||||| ||||| | | || | |||| |||| ||||| || | Sbjct 77 TCCTTGTCCTGGATCTTCTGCTTCACGGTC-TCGATCGTGTCGGAGTGGTCGACATCGAG 135 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||||||| ||| || ||| || ||||| ||||||||||||| Sbjct 136 GGTGATGGTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCATCG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069188667840