Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq30 154 3e-32 seq226 145 2e-29 >seq30 Length=128594 Score = 154 bits (170), Expect = 3e-32 Identities = 586/917 (64%), Gaps = 12/917 (1%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||||| | ||| | ||||| ||||| ||| ||||| || ||||| | | ||| || Sbjct 4230 TACGACTACTTCGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGCTCCACGGCCAG 4171 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||||| || || ||||||||| | ||||| || || ||| || ||| | || Sbjct 4170 ATCGTCGAGCGCCCACAGCACATGCTCATGCGCGTCGCCTGCGGCATCCACTTCAACAAC 4111 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 | | | | ||||||||||| | ||| | ||| | || || ||| | Sbjct 4110 CTGGCCGCTGCGATCGAGACGTACGACCTCATGTCGCAGAAGTGGTTCACCCACGCCTCC 4051 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || ||||||||||||||||| || || |||||| |||||||| || | || Sbjct 4050 CCCACGCTCTTCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCGTGCTTCCTCGTCACC 3991 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATT 249114 ||| | || ||||| |||| ||||| || ||||||||||| |||| |||| ||| Sbjct 3990 ATGAAGGAGGACTCGATCGAGGGCATCTACGACACGCTTAA---GACGTGCGCGATGATC 3934 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || || ||||| || || ||| | || | || |||| || | || || ||| Sbjct 3933 TCGAAGCAGGCCGGCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCCACCGGCTCCTAC 3874 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 ||| || || || || | | || | || || | || || || | | Sbjct 3873 ATCCGCGGCACCAACGGCACCTCGAACGGCCTGGTCCCGATGCTGCGCGTGTTCAACAAC 3814 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGG---CGCCGAAAGGGGTCGTTCGCCATGTATTTG 249291 || || | | | || |||||| || ||||| ||||| | |||||| | || || Sbjct 3813 ACGGCGCGCTACGTCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATTCGCCGTCTACCTG 3754 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||||||||| || || ||||||||| || |||||| ||||| |||| Sbjct 3753 GAGCCGTGGCACGCCGACATCATGTCCTTCCTGGACCTGCGCAAGAACCACGGCTCCGAG 3694 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | ||||| ||||| ||||||||||| ||||| | |||| | |||||| ||| Sbjct 3693 GAGGCGCGCGCGCGCGACCTTTTCTACGGCCTCTGGGTGTGCGACCTCTTCATGGAGCGC 3634 Query 249412 GTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGAT 249471 || || ||| ||| |||| ||| ||| ||| || |||| || ||| Sbjct 3633 GTGGAGAAGAACGAGCTCTGGTCGCTCTTTTGCCCGCACGAGGCGCCGGGGCTGGCCGAC 3574 Query 249472 CTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCG---GC 249528 |||||||||||||| | || | | | ||||| | | ||| || | Sbjct 3573 TCGTGGGGCGCCGACTTCGAGCGGCTGTACACGCAGTACGAGAACCAGGGCCGCGCGCGG 3514 Query 249529 AAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGG 249588 |||| |||||||| || | || | || ||| | || | ||| ||||| || Sbjct 3513 CAGACGATCAAGGCGCGCGCGCTGTGGACGGCCGTGCTCGAAGCGCAGCAGGAGACGGGC 3454 Query 249589 GGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGT 249648 ||| || | | ||| |||||||||||| |||| ||||| | | | || || Sbjct 3453 ACGCCCTACATCCTCTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCAGAACCTGGGC 3394 Query 249649 ACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATT 249708 || ||||||| || || || || | ||| | | | ||| |||| || ||| | Sbjct 3393 ACGATCCGCTGCTCGAACCTGTGCACGGAGATCGTCGAGTACACGTCGCCCGACGAGGTG 3334 Query 249709 GCCGTCTGCAACCTGGC 249725 ||||| |||||||| || Sbjct 3333 GCCGTGTGCAACCTCGC 3317 >seq226 Length=47764 Score = 145 bits (160), Expect = 2e-29 Identities = 280/411 (68%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 253995 GGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATC 254054 ||| |||| || || |||| ||| |||| || ||||| || ||||| || || || || Sbjct 7414 GGCAACCTCCCGCACCTGCTCTTCTACGGCCCGCCCGGCACGGGCAAAACATCGACGATT 7473 Query 254055 CTGGCGCTGGCCCGAACCCTGTT-GGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAG 254111 ||||| |||| || || || |||| | ||| |||| |||||| |||||| Sbjct 7474 CTGGCCGTGGCGCGCGAGCTCTTCGGGCCCG---AACTTATGAAGTCGCGCGTTCTCGAG 7530 Query 254112 CTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 || ||||| || |||| ||||| | ||||| |||| ||||| ||||||| ||| | Sbjct 7531 CTCAACGCCTCGCACGAGCGCGGTATCGACGTGATCCGTAACAAGGTCAAGACATTCGCG 7590 Query 254172 AAGATGTCGATTTCGTCGTTCCAACCCG-GC-----------TGTCCGCCTTTCAAGCTC 254219 |||| | | ||| || || ||| || || ||||| | |||| | Sbjct 7591 CAGATCGCCGTCTCGGCGCAGGAAACCGCGCCCGGGTATCCGTGCCCGCCGTACAAGATT 7650 Query 254220 GTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACG 254279 | | ||||||||||||||| |||||| |||||||||||| || || ||||| ||| Sbjct 7651 ATTGTGCTGGACGAGGCGGACTGCATGACCCGCGACGCGCAGTCTGCGCTGCGCCGCACG 7710 Query 254280 ATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATC 254339 ||||||| || | || ||||| || ||| | | |||||||| || || ||| Sbjct 7711 ATGGAGAACTACACTAAGGTCACGCGCTTCTGCATCATCTGCAACTATGTCTCCCGCATC 7770 Query 254340 ATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCGCG 254390 |||| ||| | |||| || ||||| ||||| || | || | |||||| Sbjct 7771 ATCGACCCCATCACTTCGCGCTGCGCTAAGTTCCGCTACAAGCCGCTCGCG 7821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073756577050752