Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq30 369 3e-97 seq53 154 1e-32 seq3 87.8 2e-12 seq168 86.0 6e-12 seq182 82.4 7e-11 >seq30 Length=128594 Score = 369 bits (408), Expect = 3e-97 Identities = 1219/1885 (65%), Gaps = 45/1885 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||||||||| || ||| |||||||||||||||| || ||||| Sbjct 2423 GTGCGGAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGCATCGAG 2482 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 |||| || | || | | ||||| || ||||||||||| ||| ||||| Sbjct 2483 GTCAGCTTGGCGTAGTTGACGTTGGGCATGTGGACGTTGAACGACTGCGACTGGTCGATG 2542 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 |||| || || ||||||||||| || || | || | ||| ||||| || ||| Sbjct 2543 TACGCGCCGCGGTCGGCGGCCATGTTGATGAGCGTCTTGCCCTTCATCTCCCACACCGTC 2602 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATC---CTCTGGACGGACCCGTTA 22381 ||||| | | | | || || ||| ||| || | ||| || || ||||| Sbjct 2603 TTGTAGATCTCGCGCAAGTCCTCGGGGATC---TCGGTCAGCCCCTGCACAGAGCCGTTG 2659 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGG-TCAAATCTTT 22440 ||| |||| | || || | ||| | |||||||| || |||||| | | || Sbjct 2660 TTGGCGATGAGCTTGTTCTTGAGCGTCTGGTTCCACAGTCCC-TGGCGGATGAGGTCGCG 2718 Query 22441 GACCAGATGACGGTTCAC-CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | ||| || ||| || ||| ||| |||||||| || ||| || ||| | || Sbjct 2719 CAGCAGGTGCGAGTTGACGCACACGAA-CTCGCCGGCCAGCGTGCGCCGCACGTAGAGGT 2777 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 | || ||| | | ||||| || || ||||| ||||| ||||| | || || || | Sbjct 2778 TCGACGTGTAGGCCTCGAACGACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGG 2837 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT-GCT-TTGAAATTTTACTC-TTGA 22616 |||| ||||||| || |||||||| | || ||| || |||| | ||| |||| Sbjct 2838 GCATGGGCGCCACAAGAAGCGAGTTGCGCAGCCCGACGCGCTTGA---TGCGCTCCTTGA 2894 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCC------CACATATCGTATT 22670 || | ||||||||| | || | |||| | ||| ||||| ||| | | Sbjct 2895 GCGCGGCCCAGTCCCAGCGCCCGCCCACCGTCGCGGGCTCCACGCCCCACATGTCGAACT 2954 Query 22671 GCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGG 22730 ||| | ||||||| ||||| ||| | | | ||||||| || | | ||| Sbjct 2955 GCAGCTCGCCGCGCGAGGCCGGCGAGCCCGGGAAGGACTCGTACGCGCCGTCGCGCTCGG 3014 Query 22731 CAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA 22790 | | ||||| |||| || |||| || | || || ||| | ||||| | ||||| Sbjct 3015 CCATGTCGCACGACGCCGTCAGCGCGGCGAAGTAGATGGTCGCAAAGATGTCGCGGTTCA 3074 Query 22791 ATTCGGCGGCGGCGACGCTT-----TCGTACGGCATACGCATCATCACGAACGCGTCCGC 22845 ||| | ||| | | | |||||||||| ||||| | | || |||||| || Sbjct 3075 -----GCGCCTGCGCCTCCTCGGACTCGTACGGCAGCCGCATAAGGATGAGCGCGTCGGC 3129 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 || ||||| || || | ||||| || |||| || || | ||||| Sbjct 3130 CAGGCCCTGGACACCGAGCCCGATGGGGCGGTGGCGCATGTTGCTCGTGCGCGCCTCCTT 3189 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 | || ||| || ||||| | ||| | ||| | || | | || ||| | Sbjct 3190 GACCGGGTACAGGTTGATGTCGATGACGCGGTTGAGGTTGCGCGTGGCGACTTGCGTCAC 3249 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA---ACAAACTTGTTGACGGC 23022 | |||||||| ||||| || | || || ||||| || Sbjct 3250 CTCAAACAGGCGCTGGAAGTCGTAGGTGCCCGTGCGTTCGTCGACGAAGCGGTTGAGCGC 3309 Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 ||||||||| || ||||| |||||||||||||| ||||||||||| || || || || Sbjct 3310 GATCGAGGCGAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACTCGACGATCTCCGT 3369 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || || || || |||||||||| || |||||| || || ||||||| Sbjct 3370 GCACAGGTTCGAGCAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGC 3429 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 ||||||||||| ||||| |||||||||||||| ||||| |||| | || ||| Sbjct 3430 GTCCTTGTAGAGGATGTAGGGCGTGCCCGTCTCCTGCTGCGCTTCGAGCACGGCCGTCCA 3489 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACA 23261 || | | || | | |||| || | | ||| | | |||||||| ||||| Sbjct 3490 CAGCGCGCGCGCCTTGAT-CGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACA 3548 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 | || || ||||| || | |||||||||| || |||| | ||| || | || Sbjct 3549 GCCGCTCGAAGTCGGCGCCCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGA 3608 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||| | || || || ||||| ||| || || || | ||| || ||| Sbjct 3609 GCGACCAGAGCTCGTTCTTCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGT 3668 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || ||||| |||||| ||||||| |||| |||||| || |||| ||| Sbjct 3669 AGAAAAGGTCGCGCGCGCGCGCCTCCTCGGAGCCGTGGTTCTTGCGCAGGTCCAGGAAGG 3728 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC----GGTCTCTTA 23497 || | ||| || ||||||||||| ||||| ||||| || |||||| || | | Sbjct 3729 ACATGATGTCGGCGTGCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCT- 3787 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 || ||||| |||||||| || |||||||||||| |||| | |||||||| || || Sbjct 3788 ---CCACCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGG 3844 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| || | |||| ||| | || || | || || |||| |||||| Sbjct 3845 CCGTTCGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACC 3904 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 || || ||||| ||| || ||||| ||||||||||| || || ||||||||| Sbjct 3905 GCGAGGCCAATGCCGCCGGCCTGCTTCGAGATCATCGCGCACGTCTTAAGCGTGTCGTAG 3964 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||||||||| |||||| || | | ||| | ||| ||||| |||| |||| || Sbjct 3965 ATGCCCTCGATCGAGTCCTCCTTCATGGTGACGAGGAAGCACGACGACAGCTGCGGCATG 4024 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 ||| |||| ||| || || ||| |||||| || || | | |||||| || Sbjct 4025 CACGTGCCGGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGACATGAGG 4084 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 | |||||| ||||| || || | | || | ||| || ||| |||||||||||| Sbjct 4085 TCGTACGTCTCGATCGCAGCGGCCAGGTTGTTGAAGTGGATGCCGCAGGCGACGCGCATG 4144 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 | ||||| || || | |||||| | ||||| | |||| ||| || || || | Sbjct 4145 AGCATGTGCTGTGGGCGCTCGACGATCTGGCCGTGGAGCTTGAGCAGGTACGAGCGCTCG 4204 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTC 23977 | ||| || || || || ||||| ||| ||||| || | || || ||||||| || Sbjct 4205 AGCGTCTTGAAGCCGAAGTAGTCGTAGCCGAAGTCGCGGTTGTAGACGATGGCCGCGTTG 4264 Query 23978 AAACGGTACGCATTGGCAGCGATGA 24002 | || || ||||||| ||||| Sbjct 4265 AGCGTGTCGGCGTTGGCAGAGATGA 4289 >seq53 Length=108086 Score = 154 bits (170), Expect = 1e-32 Identities = 221/309 (72%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAAC 57887 || ||||| || ||||| || ||| | | ||| | | |||||| | || || ||| Sbjct 12684 TACTCGCTCCTGATCGACACCTACATCACCGACCAGGTCGAGAAGACCCGTCTCTTTAAC 12743 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || ||||| || |||| || || || ||||| | ||| | |||| ||||| || Sbjct 12744 GCCATCGAGACCGTGCCTTCGGTCCGCACCAAGGCGGCCTGGGCCCTCAAGTGGATCAAC 12803 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | | |||| || ||||||||||| | || ||| |||||| |||||| || || ||| Sbjct 12804 AACCCCACTGCGTCGTTCGCCGAGCGCCTCGTCGGCTTCGCCTGCGTCGAGGGCATCTTC 12863 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || ||| ||| ||| || || || ||| | ||||| |||||| ||||||||| || Sbjct 12864 TTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCAAGATGCCCGGACT 12922 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || ||||||| | || |||||||||||||| ||||| || || || || ||||| Sbjct 12923 CACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTCCACACCGACTTCGCCTGCCT 12982 Query 58127 AATGTACTC 58135 | ||||| Sbjct 12983 GCTCTACTC 12991 >seq3 Length=187283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || | ||| || || || | || || || | ||| Sbjct 12305 ATGCAGATTTTCGTCAAGACCCTCGCTAACAAGACTATTACGCTTGATGTCGACCATTCC 12364 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| || ||||| |||| || ||||||||| ||| | || || |||||| Sbjct 12365 GACACGATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 12424 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||| ||||| ||| | || ||| || | ||| || ||| Sbjct 12425 CAGCGCCTCATCTTCCAGGGCAAGCAGCTCGACGACGGCCGCACCCTTGCCGACTACAAC 12484 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | || ||||| || || ||||| || |||||| Sbjct 12485 GTCCAGAAAGAGTCCACGCTTCACCTCGTACTT 12517 >seq168 Length=58069 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || | ||| || |||||| |||| || || | ||| Sbjct 177 ATGCAGATCTTCGTGAAGACGCTCGCCAACAAGACCATCACCCTCGATGTCGACCACTCC 118 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| || || || |||| || ||||||||| ||| | || || |||||| Sbjct 117 GACACGATCGAGACCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 58 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||| ||||| ||| | || || Sbjct 57 CAGCGTCTCATCTTCCAGGGCAAGCAGCTCGATGA 23 >seq182 Length=55624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || | ||| || ||||| | || || || | || Sbjct 55448 ATGCAGATTTTCGTGAAGACCCTCGCGAACAAGACCATCACTCTTGATGTCGACCACTCG 55507 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| || ||||| |||| || ||||||||| ||| | || || |||||| Sbjct 55508 GACACCATCGAGACCGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 55567 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||| ||||| ||| | || || Sbjct 55568 CAGCGTCTCATCTTCCAGGGCAAGCAGCTCGATGA 55602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762421534880