Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq429 163 2e-35 >seq429 Length=23534 Score = 163 bits (180), Expect = 2e-35 Identities = 287/414 (69%), Gaps = 7/414 (2%) Strand=Plus/Minus Query 20934 ACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGG 20993 |||||||| ||| ||||| ||||| || | | |||||| | ||| || || || Sbjct 6561 ACGTGGTTCGAGTACACGTGCGCGTCGCCGATGCAGTGCACCAGGTCGCCAGGCCGCAAA 6502 Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 ||||||| |||| | || ||||||| || |||||| |||||||| || || || Sbjct 6501 TTCGTGACGCGAGCCAGCATGCACGTCAGCAGCGCGTAGGACGCGATGTTGAAGGGCACG 6442 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGAGCCA 21111 || || ||||| |||||| | |||||| ||| |||| || ||||| || ||||| | Sbjct 6441 CCCAGCCCCATATCGGCGCTGCGCTGGTAGAGCAGGCACGAGAGCTCGCCGTCCGAG--A 6384 Query 21112 CGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGT 21171 |||| ||||| | | ||||| || || || || |||||| | |||||||| |||| Sbjct 6383 CGTAGAACTGCGAGAGCACGTGGCACGGTGGCAGCGCCATCTTGCCCAGGTCCGCCGGGT 6324 Query 21172 TCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGT 21231 ||||||| |||| | ||||||||| || ||| | | | ||| |||| Sbjct 6323 TCCACGCCGACATGATGATGCGCCGCGAGTCGGGGTTCTGGCGCAGGGTGCGCACAACGT 6264 Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291 |||||||||||| |||| ||| ||||| ||||| | | |||| ||| | Sbjct 6263 CGGCCAGCTGGTCCACGCCCTTGCCCGTGTAGTCGGCGTGGCAGTCGATGTAAGGCGCAC 6204 Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC--GC-CCTCGCGGC 21342 | || || | ||||||||| ||||| || || ||||| || || || |||||| Sbjct 6203 CGAAGTGCCGCCACTGGAAGCCGTATACAGGACCCAGGTCCTGCGCCGCGCGGC 6150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772277546720