Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 6e-14 >seq53 Length=108086 Score = 93.3 bits (102), Expect = 6e-14 Identities = 173/249 (69%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| || |||||||| | || || |||||||| || |||||| Sbjct 12979 CAGGCGAAGTCGGTGTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGT 12920 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||| ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 12919 CCGGGCATCTTGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAGAA 12861 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-- 50136 ||| || || || ||| ||| | || || | ||| | ||| | ||| || || Sbjct 12860 GATGCCCTCGACGCAGGCGAAGCCGACGAGGCGCTCGGC-GAAC-GACGCAGTGGGGTTG 12803 Query 50137 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 |||||||| | ||||| | ||||| | || |||||| || || ||||| Sbjct 12802 TTGATCCACTTGAGGGCCCAGGCCGCCTTGGTGCGGACCGAAGGCACGGTCTCGATGGCG 12743 Query 50194 TTAAAGAGA 50202 ||||||||| Sbjct 12742 TTAAAGAGA 12734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262389450960