Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq30 136 6e-27 seq53 127 3e-24 >seq30 Length=128594 Score = 136 bits (150), Expect = 6e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 98016 ATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTG 98075 ||||| || || |||||| ||||||||||| || |||||||| | ||||||||| Sbjct 2631 ATCCCCGAGGACTTGCGCGAGATCTACAAGACGGTGTGGGAGATGAAGGGCAAGACGCTC 2572 Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135 ||| | ||||| |||||| | || | ||||| |||||| || |||||||| | || Sbjct 2571 ATCAACATGGCCGCCGACCGCGGCGCGTACATCGACCAGTCGCAGTCGTTCAACGTCCAC 2512 Query 98136 GTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGC 98195 | || | || |||| |||| ||||| ||||||||||| ||||| |||||| Sbjct 2511 ATGCCCAACGTCAACTACGCCAAGCTGACCTCGATGCACTTTTACGCGTGGAAGAAGGGC 2452 Query 98196 CTCAAGACGGGCATGTACTATCT 98218 |||||||||||||||||||| || Sbjct 2451 CTCAAGACGGGCATGTACTACCT 2429 Score = 131 bits (144), Expect = 2e-25 Identities = 307/455 (67%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 ||||| | ||||||||| |||| || |||||||| ||| | | ||| | || || Sbjct 3774 GGCGCATTCGCCGTCTACCTGGAGCCGTGGCACGCCGACATCATGTCCTTCCTGGACCTG 3715 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 ||||| ||| |||| || ||||| || || | ||| | || || | ||||||||| Sbjct 3714 CGCAAGAACCACGGCTCCGAGGAGGCGCGCGCGCGCGACCTTTTCTACGGCCTCTGGGTG 3655 Query 97017 CCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGCTACTGGAGCCTAATGTGCCCC 97073 || | |||||| ||||||| || ||| ||| |||| || | ||||| Sbjct 3654 TGCGACCTCTTCATGGAGCGCGTGGAGAAGAACGA--GCT-CTGGTCGCTCTTTTGCCCG 3598 Query 97074 GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCC 97133 || | | || || ||| |||| | ||||||| || || ||| ||||||| Sbjct 3597 CACGAGGCGCCGGGGCTGGCCGACTCGTGGGGCGCCGACTTCGAGCGGCTGTACACGCAG 3538 Query 97134 TACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| | ||||||| || |||||| || | || || | ||||||| |||| | Sbjct 3537 TACGAGAACCAGGGCCGCGCGCGGCAGACGA-TCAAGGCGCGCGCGCTGTGGACGGCCGT 3479 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATC 97251 | || ||| ||||| || || || ||||| ||||||||||| | ||| || | Sbjct 3478 GCTCGAAGCGCAGCAGGAGACGGGCACGCCCTACATCCTCTACAAGGACGC-GTGCAACC 3420 Query 97252 GCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTG 97311 |||| ||||| | || ||||||| ||| |||| || ||||||||||| || | Sbjct 3419 GCAAGTCGAACCAGCAGAACCTGGGCACGATCCGCTGCTCGAACCTGTGCACGGAGATCG 3360 Query 97312 TAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | |||||| | || || |||||| ||| || ||| Sbjct 3359 TCGAGTACACGTCGCCCGACGAGGTGGCCGTGTGC 3325 >seq53 Length=108086 Score = 127 bits (140), Expect = 3e-24 Identities = 225/323 (70%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||| | || | ||||| ||||| |||| ||||| ||| Sbjct 12657 ATGATGGAGAACATCCACGCCGAGACCTACTCGCTCCTGATCGACACCTACATCACCGAC 12716 Query 125313 CCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | | || || || | ||||||||||| ||||| || ||||| || | || | || Sbjct 12717 CAGGT-CGAGAAGACCCGTCTCTTTAACGCCATCGAGACCGTGCCTTCGGTCCGCACCAA 12775 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| |||| | ||||||| | || || | |||| |||||| | || || Sbjct 12776 GGCGGCCTGGGCCCTCAAGTGGATCAACAACCCCACTGCGTCGTTCGCCGAGCGCCTCGT 12835 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | |||||| ||| |||||||||||||| | ||| | || ||| |||||||| |||| Sbjct 12836 CGGCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGC 12894 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| ||||||||||| || | |||||| | || || || |||| Sbjct 12895 TCAAGAAGCGCGGCAAGATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGACG 12954 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 ||||||| ||| ||||| ||| Sbjct 12955 AGGGCCTCCACACCGACTTCGCC 12977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052586046640