Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq449 136 3e-27 >seq449 Length=32475 Score = 136 bits (150), Expect = 3e-27 Identities = 198/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| |||| | ||| ||||| || ||| |||| Sbjct 16737 ACGCCGGTGGAGCCGAAGCCGCCCTCGCCGCGGACCGAGTCGTCGAGCTCGGCCGCCTCC 16796 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 || || |||| | | |||||| ||| |||||||| | ||||| ||| Sbjct 16797 TCGACCTCGGCCGTCTCGTAGCGCTCCAGGATGAGCTGCGCCACGCGGTCTCCCTCGGCC 16856 Query 5621 ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || |||| || || || || |||||| || | |||||| ||||||||||||||||| Sbjct 16857 ACGGCGAAGTCAACGTCGCTGAGGTTGAAGAGGATCACGCCGACGTTGCCGCGGTAGTCC 16916 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 || || ||||||||||| ||||||||| || ||| |||||| |||||||| || Sbjct 16917 TGATCGATGACGCCCGCGCCGACGTCGATGCTGTTCTTCCACGCCAGCCCGGAGCGCGGC 16976 Query 5741 GCCACGCGGCCGTA-GCACCCATCGGGAAGCTGTATC 5776 |||||||| ||||| | |||| |||| | ||| ||| Sbjct 16977 GCCACGCGCCCGTATACGCCCA-CGGGCATCTGGATC 17012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430050657720368