Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq53 84.2 3e-11 >seq53 Length=108086 Score = 84.2 bits (92), Expect = 3e-11 Identities = 170/249 (68%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| || |||||||| | || || |||||||| || |||||| Sbjct 12979 CAGGCGAAGTCGGTGTGGAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGT 12920 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||| ||||| || ||||| || |||| ||| || || || |||||| Sbjct 12919 CCGGGCATCTTGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAG 12860 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-- 33480 || || || || ||| || ||| | | || | ||| | | || ||| || || Sbjct 12859 ATGCCCTCGAC-GCAGGCGAAGCCGACGAGGCGCTCGGC--GAACGACGCAGTGGGGTTG 12803 Query 33481 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 |||||||| | ||||| | ||||| | || |||||| || || ||||| Sbjct 12802 TTGATCCACTTGAGGGCCCAGGCCGCCTTGGTGCGGACCGAAGGCACGGTCTCGATGGCG 12743 Query 33538 TTAAAGAGA 33546 ||||||||| Sbjct 12742 TTAAAGAGA 12734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941640196240