Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq30 235 1e-56 >seq30 Length=128594 Score = 235 bits (260), Expect = 1e-56 Identities = 518/767 (68%), Gaps = 12/767 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| || || || | | || ||| |||| || Sbjct 4065 TTCACCCACGCCTCCCCCACGCTCTTCAACGCCGGCACGTGCATGCCGCAGCTGTCGTCG 4006 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || || |||||||| |||| ||||| ||||||| Sbjct 4005 TGCTTCCTCGTCACCATGAAGGAGGACTCGATCGAGGGCATCTACGACACGCTTAAGACG 3946 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || || | || || ||| | || ||||| ||||| | || | ||| | || || || Sbjct 3945 TGCGCGATGATCTCGAAGCAGGCCGGCGGCATTGGCCTCGCGGTTCACGACGTCCGCGCC 3886 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | ||||| |||||||| || |||||| || ||||| || ||||| || Sbjct 3885 ACCGG-CTCCTACATCCGCGGCACCAACGGCACCTCGAACGGCCTGGTCCCGATGCTGCG 3827 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||||| |||| || ||| | |||||||||||||||||||| ||||| || || || Sbjct 3826 CGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGTGGAGGCCGCCGCAAGGGCGCATT 3767 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || | || || ||||| || ||||| || | || || || || || || || Sbjct 3766 CGCCGTCTACCTGGAGCCGTGGCACGCCGACATCATGTCCTTCCTGGACCTGCGCAAGAA 3707 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 | || ||||| ||| || || || || ||||| | || ||||| | |||| Sbjct 3706 CCACGGCTCCGAGGAGGCGCGCGCGCGCGACCTTTTCTACGGCCTCTGGGTGTGCGACCT 3647 Query 363966 TTTTATGAAGCGCGTGGAG--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || ||| ||||||||||| | | | || ||||| ||||||||||| ||||| Sbjct 3646 CTTCATGGAGCGCGTGGAGAAGAACG--AGCTCTGGTCGCTCTTTTGCCCGCACGAGGCG 3589 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAAT 364081 || || || |||| ||||| | ||||| | ||| || ||| |||| || Sbjct 3588 CCGGGGCTGGCCGACTCGTGGGGCGCCGACTTCGAGCGGCTGTACACG--CAGTACGAGA 3531 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 |||| || || |||| || || | ||| ||| ||| | | || Sbjct 3530 ACCAGGGCCGCGCGCGGCAGACGATCAAGGCGCGCGCGCTGTGGACGGCCGTGCTCGAAG 3471 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 ||||| ||||| || || ||||| || | ||||| || |||||||||||||||| | Sbjct 3470 CGCAGCAGGAGACGGGCACGCCCTACATCCTCTACAAGGACGCGTGCAACCGCAAGTCGA 3411 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 |||||||| |||| || || | || || | | ||||| || || ||||| | || ||| Sbjct 3410 ACCAGCAGAACCTGGGCACGA-TCCGCTGCTCGAACCTGTGCACGGAGATCGTCGAGTAC 3352 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || | ||||||||| ||||| || ||||| || ||||||||||| Sbjct 3351 ACGTCGCCCGACGAGGTGGCCGTGTGCAACCTCGCCTCGATCGCGCT 3305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341676758348