Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizaria_20sp._20SCN_2062-66_20[genbank_20GCA_5F001724265.1_202016- 09-13] 714 sequences; 34,916,453 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq30 199 4e-46 seq53 111 1e-19 seq3 102 8e-17 seq168 82.4 7e-11 >seq30 Length=128594 Score = 199 bits (220), Expect = 4e-46 Identities = 922/1444 (64%), Gaps = 58/1444 (4%) Strand=Plus/Plus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 ||||||||||||| | || |||| || | ||| |||||| ||| || || |||||| Sbjct 2744 AACTCGCCGGCCAGCGTGCGCCGCACGTAGAGGTTCGACGTGTAGGCCTCGAACGACTCG 2803 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || ||||||||||| || | || | || ||||||||| |||||| | | || ||| Sbjct 2804 TTGTTGCCCAGGATCTGCGACGTGCTGGCCGTGGGCATGGGCGCCACAAGAAGCGAGTTG 2863 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAA------ 145243 ||||| ||| ||||||| ||||| |||| |||| ||||| || Sbjct 2864 CGCAGCCCGACGCGCTTGATGCGCTCCTTGAGCGCGGCCCAGTCCCAGCGCCCGCCCACC 2923 Query 145244 GTCG---GCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT-GGCGGGGCTGCC 145299 |||| || |||| ||||||||||| |||||| ||| ||| ||| || ||| Sbjct 2924 GTCGCGGGCTCCACGCCCCACATGTCGAACTGCAGCTCGCCG-CGCGAGGCCGGCGAGCC 2982 Query 145300 TTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCC 145359 | ||||| ||| ||| | ||| | ||||| |||| ||| ||| | Sbjct 2983 CGGGAAGGACTCGTACGCGCCGTCGCGCTCGGCCATGTCGCACGACGCCGTCAGCGCGGC 3042 Query 145360 GAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGG 145419 ||| || || ||| | || | | ||| ||| | ||| || ||| ||||||||| Sbjct 3043 GAAGTAGATGGTCGCAAAGATGTCGCGGTTCAGCGCCTGCGCCTCCTCGGACTCGTACGG 3102 Query 145420 CATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATG 145479 || |||| || | | || ||||| || ||||| | || | |||||||| || || Sbjct 3103 CAGCCGCATAAGGATGAGCGCGTCGGCCAGGCCCTGGACACCGAGCCCGATGGGGCGGTG 3162 Query 145480 TTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATT 145539 |||||||||| | | |||| || || || || | || |||||| | || Sbjct 3163 GCGCATGTTGCTCGTGCGCGCCTCCTTGACCGGGTACAGGTTGATGTCGATGACGCGGTT 3222 Query 145540 CAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA-----CCGA 145594 | ||| ||| | || | || | | || | ||||| | ||| Sbjct 3223 GAGGTTGCGCGTGGCGACTTGCGTCACCTCAAACAGGCGCTGGAAGTCGTAGGTGCCCGT 3282 Query 145595 GCCT-CGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || | |||| |||| ||| |||| |||||||| || | || || || ||| Sbjct 3283 GCGTTCGTCGACGA------AGCGGTTGAGCGCGATCGAGGCGAGGTTGCACACGGCCAC 3336 Query 145654 CTCCTCGG-CGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| |||| || || |||| | |||||||| | ||||| || || ||| || | Sbjct 3337 CTCGTCGGGCGACG-TGTACTCGACGATCTCCGTGCACAGGTTCGAGCAGCGGATCGTGC 3395 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || ||||| || || | ||||||||||||||||||||| ||||| || || Sbjct 3396 CCAGGTTCTGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTAGAGGATGTAGGGCGTGC 3455 Query 145773 CAGTCTCCACCTGCGTCTC---CACGATAAAACGGTGCAAGTCCTGCGCACGCACCTG-- 145827 | |||||| ||||| || |||| | || || | |||| ||| ||| Sbjct 3456 CCGTCTCCTGCTGCGCTTCGAGCACGG-----CCGTCCA----CAGCGCGCGCGCCTTGA 3506 Query 145828 ----CTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAAC 145883 |||| | |||||||| | ||||| | | |||| ||| ||| || ||| | Sbjct 3507 TCGTCTGCCGCGCGCGGCCCTGGTTCTCGTACTGCGTGTACAGCCGCTCGAAGTCGGCGC 3566 Query 145884 CGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGG 145943 | | | |||| ||| || || || || || || | |||||||| | |||| Sbjct 3567 CCCACGAGTCGGCCAGCCCCGGCGCCTCGTGCGGGCAAAAGAGCGACCAGAGCTCGTTCT 3626 Query 145944 CGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTT 146003 | ||||||||||| || | || |||||| || |||| | | ||||||||| Sbjct 3627 TCTCCACGCGCTCCATGAAGAGGTCGCACACCCAGAGGCCGTAGAAAAGGTCGCGCGCGC 3686 Query 146004 TGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACTATA-GATGTCCGCGT 146060 ||||| | | || || ||| || || | || | | | | |||||| |||| Sbjct 3687 GCGCCTCCTCGG-AGCCGTGGTTCTTGCG-CAGGTCCAGGA-AGGACATGATGTCGGCGT 3743 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTGCC---ACCCTGGTCCACGT 146117 ||||||| || | |||||||||| || || || || ||| ||||||||| |||| Sbjct 3744 GCCACGGCTCCAGGTAGACGGCGAATGCGCCCTTGCGGCGGCCTCCACCCTGGTCGACGT 3803 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || || ||||||| || ||||||| ||| || | | |||| | | |||||| | Sbjct 3804 AGCGCGCCGTGTTGTTGAACACGCGCAGCATCGGGACCAGGCCGTTCGAGGTGCCGTTGG 3863 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | || || |||| || ||| ||| ||||| | ||| | |||||| Sbjct 3864 TGCCGCGGATGTAGGAGCCGGTGGCGCGGACGTCGTGAACCGCGAGGCCAATGCCGCCGG 3923 Query 146238 CGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 | | ||| || || ||||| ||| ||||| ||||||||||| || || || Sbjct 3924 CCTGCTTCGAGATCATCGCGCACGTCTTA-AGCGTGTCGTAGATGCCCTCGATCGAGTCC 3982 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| ||| || || |||||||| ||| ||||| ||| ||| || || || Sbjct 3983 TCCTTC--ATGGTGACGAGGAAGCACGACGACAGCTGCGGCATGCACGTGCCGGCGTTGA 4040 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 | | ||| ||| ||||| || ||| || | ||| | ||||| ||||| | Sbjct 4041 AGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTGCGACATGAGGTCGTACGTCTCGATCG 4100 Query 146415 CGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 | | | || || | || ||||| | |||||||||||||||||||| || || | Sbjct 4101 CAGCGGCCAGGTTGTTGAAGTGGATGCCGCAGGCGACGCGCATGAGCATGTGCTGTGGGC 4160 Query 146475 GCTC 146478 |||| Sbjct 4161 GCTC 4164 >seq53 Length=108086 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 46110 CTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTT 46169 |||||| | ||||||||||||| | ||| ||| | ||||||||||| | || | ||| Sbjct 12782 CTGGGCCCTCAAGTGGATCAACAACCCCACTGCGTCGTTCGCCGAGCGCCTCGTCGGCTT 12841 Query 46170 TGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAAC 46229 || || |||||| |||| || || ||| || ||||||||| | |||| | Sbjct 12842 CGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAA 12901 Query 46230 CAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCT 46289 |||| |||||||| || || || ||||||||| || ||||||||||||||||| Sbjct 12902 GCGCGGCAAGATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCT 12961 Query 46290 GCATACGGACTTTGCGTGTCT 46310 || || ||||| || || || Sbjct 12962 CCACACCGACTTCGCCTGCCT 12982 >seq3 Length=187283 Score = 102 bits (112), Expect = 8e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||||||| || || | || | || ||||| || || | |||||| ||| Sbjct 12531 CCACCGCGCAAACGAAGTACGAGGTGAAGCGTGGACTCTTTCTGGACGTTGTAGTCGGCA 12472 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||| | |||| | |||||||||||||| || Sbjct 12471 AGGGTGCGGCCGTCGTCGAGCTGCTTGCCCTGGAAGATGAGGCGCTGCTGGTCCGGGGGA 12412 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGG--TGGACTCGA 131185 || || || ||||| ||| |||||||||| ||| | || |||| ||| |||| Sbjct 12411 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGGTCTCGATCGTGTCGGAATGG--TCGA 12354 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || | || || || |||||||||||||| Sbjct 12353 CATCAAGCGTAATAGTCTTGTTAGCGAGGGTCTTGACGAAAATCTGCAT 12305 >seq168 Length=58069 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| | |||| | ||||||||||||||| ||||| || || ||| Sbjct 23 TCATCGAGCTGCTTGCCCTGGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 82 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| |||||||| | ||| | || |||| | |||| |||| ||| | | Sbjct 83 TCCTGGATCTTCTGCTTCACGGTCTCGATCGTGTCGGAGTGGTCGACATCGAGGGTGATG 142 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || ||||| |||||||| Sbjct 143 GTCTTGTTGGCGAGCGTCTTCACGAAGATCTGCAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008587285760